KEGG   PATHWAY: psa03018
Entry
psa03018                    Pathway                                
Name
RNA degradation - Stutzerimonas stutzeri A1501
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
psa03018  RNA degradation
psa03018

Other DBs
GO: 0006401
Organism
Stutzerimonas stutzeri A1501 [GN:psa]
Gene
PST_0409  (di)nucleoside polyphosphate hydrolase, putative [KO:K08311] [EC:3.6.1.-]
PST_2631  rne; ribonuclease E [KO:K08300] [EC:3.1.26.12]
PST_1177  rhlB; ATP-dependent RNA helicase RhlB [KO:K03732] [EC:5.6.2.7]
PST_1557  eno; enolase [KO:K01689] [EC:4.2.1.11]
PST_3306  pnp; polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
PST_3937  ATP-dependent RNA helicase, DEAD box family [KO:K11927] [EC:5.6.2.7]
PST_0878  probable ATP-dependent RNA helicase [KO:K11927] [EC:5.6.2.7]
PST_3659  vacB; ribonuclease R [KO:K12573] [EC:3.1.13.1]
PST_2507  ATP-dependent RNA helicase, DEAD box family [KO:K05592] [EC:5.6.2.7]
PST_2467  recQ; ATP-dependent DNA helicase RecQ [KO:K03654] [EC:5.6.2.4]
PST_0296  ATP-dependent DNA helicase domain protein [KO:K03654] [EC:5.6.2.4]
PST_0543  rho; transcription termination factor Rho [KO:K03628]
PST_3327  dnaK; DnaK protein [KO:K04043]
PST_3145  groEL; GroEL protein [KO:K04077] [EC:5.6.1.7]
PST_3668  small nuclear ribonucleoprotein [KO:K03666]
PST_0541  ppk; polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
PST_3294  pcnB; poly(A) polymerase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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