KEGG   PATHWAY: pvir00630
Entry
pvir00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Panicum virgatum (switchgrass)
Class
Metabolism; Carbohydrate metabolism
Pathway map
pvir00630  Glyoxylate and dicarboxylate metabolism
pvir00630

Module
pvir_M00012  Glyoxylate cycle [PATH:pvir00630]
pvir_M00532  Photorespiration [PATH:pvir00630]
pvir_M00621  Glycine cleavage system [PATH:pvir00630]
Other DBs
GO: 0046487 0043648
Organism
Panicum virgatum (switchgrass) [GN:pvir]
Gene
120690020  isocitrate lyase-like [KO:K01637] [EC:4.1.3.1]
120661550  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
120640867  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
120655903  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
120703305  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
120681824  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal-like [KO:K01895] [EC:6.2.1.1]
120691028  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
120652634  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
120652635  acetate/butyrate--CoA ligase AAE7, peroxisomal-like [KO:K01913] [EC:6.2.1.1 6.2.1.2]
120641311  malate synthase, glyoxysomal-like isoform X1 [KO:K01638] [EC:2.3.3.9]
120682384  malate synthase, glyoxysomal isoform X1 [KO:K01638] [EC:2.3.3.9]
120642702  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120689027  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
120650780  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120682136  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120700228  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
120689936  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
120661916  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120678539  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120649599  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
120664559  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
120664563  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
120694577  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120667061  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
120667062  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
120697770  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
120697771  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
120712447  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120654958  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
120655191  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
120648806  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
120695112  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
120689512  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
120647383  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
120677805  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
120711644  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
120706239  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
120677008  acetyl-CoA acetyltransferase, cytosolic 1-like isoform X1 [KO:K00626] [EC:2.3.1.9]
120663769  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
120696895  acetyl-CoA acetyltransferase, cytosolic 1-like [KO:K00626] [EC:2.3.1.9]
120641829  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like isoform X1 [KO:K11517] [EC:1.1.3.15]
120641832  peroxisomal (S)-2-hydroxy-acid oxidase GLO2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
120641833  peroxisomal (S)-2-hydroxy-acid oxidase GLO2-like [KO:K11517] [EC:1.1.3.15]
120687891  peroxisomal (S)-2-hydroxy-acid oxidase GLO1-like isoform X1 [KO:K11517] [EC:1.1.3.15]
120659345  peroxisomal (S)-2-hydroxy-acid oxidase GLO5-like [KO:K11517] [EC:1.1.3.15]
120661833  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 isoform X1 [KO:K11517] [EC:1.1.3.15]
120661978  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [KO:K11517] [EC:1.1.3.15]
120649530  peroxisomal (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
120694486  peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [KO:K11517] [EC:1.1.3.15]
120682637  peroxisomal (S)-2-hydroxy-acid oxidase GLO3-like isoform X1 [KO:K11517] [EC:1.1.3.15]
120683864  peroxisomal (S)-2-hydroxy-acid oxidase GLO3 [KO:K11517] [EC:1.1.3.15]
120684053  peroxisomal (S)-2-hydroxy-acid oxidase GLO2-like isoform X1 [KO:K11517] [EC:1.1.3.15]
120689712  catalase isozyme C [KO:K03781] [EC:1.11.1.6]
120704548  catalase isozyme B [KO:K03781] [EC:1.11.1.6]
120647421  catalase isozyme C-like [KO:K03781] [EC:1.11.1.6]
120697493  catalase isozyme 3-like [KO:K03781] [EC:1.11.1.6]
120654421  catalase isozyme 3 [KO:K03781] [EC:1.11.1.6]
120668897  catalase isozyme B-like [KO:K03781] [EC:1.11.1.6]
120683218  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
120683219  uncharacterized protein LOC120683219 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
120639580  glyoxylate/hydroxypyruvate reductase HPR3-like isoform X1 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
120639581  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
120639574  glyoxylate/hydroxypyruvate reductase HPR3-like [KO:K15919] [EC:1.1.1.79 1.1.1.81]
120656108  glyoxylate/succinic semialdehyde reductase 1-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
120705234  glyoxylate/succinic semialdehyde reductase 1-like isoform X1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
120675901  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
120709884  glyoxylate/succinic semialdehyde reductase 2, chloroplastic-like [KO:K18121] [EC:1.1.1.79 1.1.1.-]
120710210  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
120654339  glycerate dehydrogenase HPR, peroxisomal-like [KO:K15893] [EC:1.1.1.29]
120673451  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
120660146  phosphoglycolate phosphatase 2-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
120681501  phosphoglycolate phosphatase 1A, chloroplastic-like [KO:K19269] [EC:3.1.3.18 3.1.3.48]
120689563  LOW QUALITY PROTEIN: ribulose bisphosphate carboxylase large chain [KO:K01601] [EC:4.1.1.39]
11123559  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
120699285  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
120665718  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
120665837  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
120698927  ribulose bisphosphate carboxylase small chain A, chloroplastic-like [KO:K01602] [EC:4.1.1.39]
120665799  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
120699049  serine--glyoxylate aminotransferase-like [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
120659204  glutamate--glyoxylate aminotransferase 1-like [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
120660037  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
120662072  ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
120694741  ferredoxin-dependent glutamate synthase, chloroplastic-like isoform X1 [KO:K00284] [EC:1.4.7.1]
120641001  glutamine synthetase cytosolic isozyme 1-1 [KO:K01915] [EC:6.3.1.2]
120642051  glutamine synthetase, chloroplastic-like [KO:K01915] [EC:6.3.1.2]
120657160  glutamine synthetase cytosolic isozyme 1-1-like [KO:K01915] [EC:6.3.1.2]
120690807  glutamine synthetase root isozyme 5 [KO:K01915] [EC:6.3.1.2]
120646816  glutamine synthetase root isozyme 5-like [KO:K01915] [EC:6.3.1.2]
120692336  glutamine synthetase root isozyme 2-like [KO:K01915] [EC:6.3.1.2]
120650000  glutamine synthetase root isozyme 2 [KO:K01915] [EC:6.3.1.2]
120683477  glutamine synthetase, chloroplastic [KO:K01915] [EC:6.3.1.2]
120699152  glutamine synthetase root isozyme 2-like [KO:K01915] [EC:6.3.1.2]
120699310  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
120672564  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
120673746  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
120706680  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
120706692  serine hydroxymethyltransferase 4-like [KO:K00600] [EC:2.1.2.1]
120692176  serine hydroxymethyltransferase, mitochondrial [KO:K00600] [EC:2.1.2.1]
120649829  serine hydroxymethyltransferase, mitochondrial-like [KO:K00600] [EC:2.1.2.1]
120708830  serine hydroxymethyltransferase 7-like [KO:K00600] [EC:2.1.2.1]
120675302  glycine dehydrogenase (decarboxylating) 2, mitochondrial-like [KO:K00281] [EC:1.4.4.2]
120707810  glycine dehydrogenase (decarboxylating), mitochondrial-like [KO:K00281] [EC:1.4.4.2]
120641831  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
120683482  aminomethyltransferase, mitochondrial-like [KO:K00605] [EC:2.1.2.10]
120673181  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
120674237  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
120706801  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
120706830  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
120697498  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
120697513  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
120667258  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
120667284  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
120654770  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
120663764  glycine cleavage system H protein, mitochondrial-like [KO:K02437]
120664900  glycine cleavage system H protein 2, mitochondrial-like [KO:K02437]
120696892  glycine cleavage system H protein, mitochondrial-like isoform X1 [KO:K02437]
120675273  D-glycerate 3-kinase, chloroplastic-like isoform X1 [KO:K15918] [EC:2.7.1.31]
120707632  D-glycerate 3-kinase, chloroplastic-like isoform X1 [KO:K15918] [EC:2.7.1.31]
120669931  formate dehydrogenase 1, mitochondrial [KO:K00122] [EC:1.17.1.9]
120703205  formate dehydrogenase 1, mitochondrial-like [KO:K00122] [EC:1.17.1.9]
120656323  formyltetrahydrofolate deformylase 2, mitochondrial-like isoform X1 [KO:K01433] [EC:3.5.1.10]
120707414  formyltetrahydrofolate deformylase 2, mitochondrial-like [KO:K01433] [EC:3.5.1.10]
120674988  pentatricopeptide repeat-containing protein At4g21300-like [KO:K01455] [EC:3.5.1.49]
120708156  formamidase-like [KO:K01455] [EC:3.5.1.49]
120710187  pentatricopeptide repeat-containing protein At5g48910-like [KO:K01455] [EC:3.5.1.49]
120642156  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
120682853  oxalate--CoA ligase-like [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
pvir00010  Glycolysis / Gluconeogenesis
pvir00020  Citrate cycle (TCA cycle)
pvir00030  Pentose phosphate pathway
pvir00053  Ascorbate and aldarate metabolism
pvir00071  Fatty acid degradation
pvir00230  Purine metabolism
pvir00250  Alanine, aspartate and glutamate metabolism
pvir00260  Glycine, serine and threonine metabolism
pvir00620  Pyruvate metabolism
pvir00710  Carbon fixation in photosynthetic organisms
pvir00750  Vitamin B6 metabolism
pvir00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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