KEGG   PATHWAY: sec03018
Entry
sec03018                    Pathway                                
Name
RNA degradation - Salmonella enterica subsp. enterica serovar Choleraesuis
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
sec03018  RNA degradation
sec03018

Other DBs
GO: 0006401
Organism
Salmonella enterica subsp. enterica serovar Choleraesuis [GN:sec]
Gene
SCH_2943  ygdP; putative invasion protein; NTP pyrophosphohydrolase [KO:K08311] [EC:3.6.1.-]
SCH_1132  rne; RNase E [KO:K08300] [EC:3.1.26.12]
SCH_3820  rhlB; putative helicase [KO:K03732] [EC:5.6.2.7]
SCH_2886  eno; enolase [KO:K01689] [EC:4.2.1.11]
SCH_3223  pnp; polynucleotide phosphorylase, member of mRNA degradosome [KO:K00962] [EC:2.7.7.8]
SCH_0817  rhlE; putative ATP-dependent RNA helicase [KO:K11927] [EC:5.6.2.7]
SCH_4244  vacB; putative exoribonuclease [KO:K12573] [EC:3.1.13.1]
SCH_3221  deaD; cysteine sulfinate desulfinase [KO:K05592] [EC:5.6.2.7]
SCH_3857  recQ; ATP-dependent DNA helicase [KO:K03654] [EC:5.6.2.4]
SCH_3822  rho; transcription termination factor Rho; polarity suppressor [KO:K03628]
SCH_3953  pfkA; 6-phosphofructokinase I [KO:K00850] [EC:2.7.1.11]
SCH_0012  dnaK; chaperone Hsp70 in DNA biosynthesis/cell division [KO:K04043]
SCH_4209  mopA; chaperone Hsp60 with peptide-dependent ATPase activity, affects cell division [KO:K04077] [EC:5.6.1.7]
SCH_4237  hfq; host factor I for bacteriophage Q beta replication, a growth-related protein [KO:K03666]
SCH_2498  ppk; polyphosphate kinase, component of RNA degradosome [KO:K00937] [EC:2.7.4.1]
SCH_0184  pcnB; poly(A) polymerase I [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   
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