KEGG   PATHWAY: yan00630
Entry
yan00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Salipiger sp. CCB-MM3
Class
Metabolism; Carbohydrate metabolism
Pathway map
yan00630  Glyoxylate and dicarboxylate metabolism
yan00630

Module
yan_M00373  Ethylmalonyl pathway [PATH:yan00630]
yan_M00621  Glycine cleavage system [PATH:yan00630]
yan_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:yan00630]
Other DBs
GO: 0046487 0043648
Organism
Salipiger sp. CCB-MM3 [GN:yan]
Gene
AYJ57_03785  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AYJ57_02765  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
AYJ57_12905  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
AYJ57_01745  malate synthase G [KO:K01638] [EC:2.3.3.9]
AYJ57_04580  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AYJ57_01355  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AYJ57_01550  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AYJ57_20320  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AYJ57_15015  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYJ57_20090  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYJ57_07995  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYJ57_09725  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AYJ57_09715  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
AYJ57_19880  acyl dehydratase [KO:K17865] [EC:4.2.1.55]
AYJ57_19300  (R)-hydratase [KO:K17865] [EC:4.2.1.55]
AYJ57_19885  hypothetical protein [KO:K17865] [EC:4.2.1.55]
AYJ57_04475  crotonyl-CoA carboxylase/reductase [KO:K14446] [EC:1.3.1.85]
AYJ57_06825  methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
AYJ57_04480  protein meaA [KO:K14447] [EC:5.4.99.63]
AYJ57_10165  acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
AYJ57_04535  hypothetical protein [KO:K14449] [EC:4.2.1.148]
AYJ57_18165  malyl-CoA lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
AYJ57_04550  malyl-CoA thiolesterase [KO:K14451] [EC:3.1.2.30]
AYJ57_16710  acetyl/propionyl-CoA carboxylase subuit alpha [KO:K01965] [EC:6.4.1.3]
AYJ57_16685  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
AYJ57_16720  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
AYJ57_07070  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
AYJ57_07075  2-hydroxy-acid oxidase [KO:K11472] [EC:1.1.99.14]
AYJ57_07080  2-hydroxy-acid oxidase [KO:K11473] [EC:1.1.99.14]
AYJ57_02290  catalase [KO:K03781] [EC:1.11.1.6]
AYJ57_07295  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
AYJ57_04395  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AYJ57_18755  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AYJ57_10970  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AYJ57_24795  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AYJ57_14690  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
AYJ57_02915  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
AYJ57_06245  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
AYJ57_15290  phosphatase [KO:K01091] [EC:3.1.3.18]
AYJ57_18275  rbcL; ribulose 1,5-bisphosphate carboxylase [KO:K01601] [EC:4.1.1.39]
AYJ57_18270  ribulose 1,5-bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
AYJ57_03660  septum site-determining protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
AYJ57_16075  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
AYJ57_15415  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYJ57_13080  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYJ57_10615  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYJ57_10625  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
AYJ57_16470  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AYJ57_19370  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
AYJ57_25215  hypothetical protein [KO:K00600] [EC:2.1.2.1]
AYJ57_08195  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
AYJ57_08205  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
AYJ57_03000  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYJ57_22990  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYJ57_04615  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AYJ57_08200  glycine cleavage system protein H [KO:K02437]
AYJ57_13385  hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
AYJ57_24870  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AYJ57_12205  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AYJ57_22835  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AYJ57_22890  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
AYJ57_22895  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
AYJ57_22830  formate dehydrogenase [KO:K00124]
AYJ57_22825  formate dehydrogenase subunit gamma [KO:K00127]
AYJ57_07125  esterase [KO:K01432] [EC:3.5.1.9]
AYJ57_12450  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AYJ57_22290  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AYJ57_19375  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AYJ57_05320  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
yan00010  Glycolysis / Gluconeogenesis
yan00020  Citrate cycle (TCA cycle)
yan00030  Pentose phosphate pathway
yan00053  Ascorbate and aldarate metabolism
yan00071  Fatty acid degradation
yan00230  Purine metabolism
yan00250  Alanine, aspartate and glutamate metabolism
yan00260  Glycine, serine and threonine metabolism
yan00620  Pyruvate metabolism
yan00750  Vitamin B6 metabolism
yan00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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