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KO |
09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:agc03030]
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03410 Base excision repair [PATH:agc03410]
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03420 Nucleotide excision repair [PATH:agc03420]
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03430 Mismatch repair [PATH:agc03430]
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03440 Homologous recombination [PATH:agc03440]
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03450 Non-homologous end-joining [PATH:agc03450]
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BSY240_2159 Ku protein
BSY240_2161 Ku protein
BSY240_2160 ligD; DNA ligase D
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K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:agc03000]
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03021 Transcription machinery [BR:agc03021]
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03019 Messenger RNA biogenesis [BR:agc03019]
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03041 Spliceosome
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03011 Ribosome [BR:agc03011]
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03009 Ribosome biogenesis [BR:agc03009]
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03016 Transfer RNA biogenesis [BR:agc03016]
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03012 Translation factors [BR:agc03012]
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03110 Chaperones and folding catalysts [BR:agc03110]
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04131 Membrane trafficking [BR:agc04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:agc03032]
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03036 Chromosome and associated proteins [BR:agc03036]
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03400 DNA repair and recombination proteins [BR:agc03400]
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BSY240_893 DNA photolyase family protein
BSY240_2035 FAD binding domain of DNA photolyase family protein
BSY240_4091 ung; uracil-DNA glycosylase
BSY240_1612 mutY; A/G-specific adenine glycosylase
BSY240_3844 nth; endonuclease III
BSY240_3242 mutator mutT family protein
BSY240_429 NUDIX domain protein
BSY240_1274 NUDIX domain protein
BSY240_2462 dut; dUTP diphosphatase family protein
BSY240_3846 methylated-DNA--[]-cysteine S-methyltransferase family protein
BSY240_1304 methylated-DNA--[]-cysteine S-methyltransferase family protein
BSY240_173 helix-turn-helix domain protein
BSY240_1549 metal binding domain of Ada family protein
BSY240_3045 deoxyribodipyrimidine photo-lyase-related family protein
BSY240_2833 2OG-Fe(II) oxygenase superfamily protein
BSY240_4409 putative DNA metabolism protein
BSY240_1356 uracil-DNA glycosylase, 4 family protein
BSY240_3228 hhH-GPD superbase excision DNA repair family protein
BSY240_1841 methyladenine glycosylase family protein
BSY240_2449 mutM; DNA-formamidopyrimidine glycosylase
BSY240_881 xth; exodeoxyribonuclease III
BSY240_2944 exodeoxyribonuclease III family protein
BSY240_786 recJ; single-stranded-DNA-specific exonuclease RecJ
BSY240_216 ligA; DNA ligase, NAD-dependent
BSY240_2659 polA; DNA polymerase I
BSY240_589 uvrA; excinuclease ABC subunit A
BSY240_505 uvrB; excinuclease ABC subunit B
BSY240_1206 uvrC; excinuclease ABC subunit C
BSY240_242 hypothetical protein
BSY240_4551 hypothetical protein
BSY240_997 rpoB; DNA-directed RNA polymerase, beta subunit
BSY240_996 DNA-directed RNA polymerase, beta'' subunit
BSY240_965 rpoA; DNA-directed RNA polymerase, alpha subunit
BSY240_1302 rpoZ; DNA-directed RNA polymerase, omega subunit
BSY240_577 mfd; transcription-repair coupling factor
BSY240_2424 mutS; DNA mismatch repair protein MutS
BSY240_1801 mutL; DNA mismatch repair MutL family protein
BSY240_2511 xseA; exodeoxyribonuclease VII, large subunit
BSY240_1709 xseB; exodeoxyribonuclease VII, small subunit
BSY240_1077 dnaE; DNA polymerase III, alpha subunit
BSY240_2479 dnaN; DNA polymerase III, beta subunit
BSY240_1218 DNA polymerase III chi subunit, HolC family protein
BSY240_2876 holA; DNA polymerase III, delta subunit
BSY240_631 ATPase associated with various cellular activities family protein
BSY240_222 exonuclease family protein
BSY240_3369 exonuclease, DNA polymerase III, epsilon subunit family domain protein
BSY240_2864 dnaQ; DNA polymerase III, epsilon subunit
BSY240_2683 dnaX; DNA polymerase III, subunit gamma and tau
BSY240_590 ssb; single-stranded DNA-binding family protein
BSY240_596 phoH-like family protein
BSY240_374 recA; protein RecA
BSY240_4056 ruvA; Holliday junction DNA helicase RuvA
BSY240_4053 ruvB; Holliday junction DNA helicase RuvB
BSY240_4059 ruvC; crossover junction endodeoxyribonuclease RuvC
BSY240_3130 priA; primosomal protein N'
BSY240_1250 radA; DNA repair protein RadA
BSY240_2671 recF; DNA replication and repair RecF family protein
BSY240_575 recG; ATP-dependent DNA helicase RecG
BSY240_1291 recO; DNA repair protein RecO
BSY240_2687 recR; recombination protein RecR
BSY240_213 recN; DNA repair protein RecN
BSY240_2846 addA; double-strand break repair helicase AddA
BSY240_2845 addB; double-strand break repair protein AddB
BSY240_1496 ftsK/SpoIIIE family protein
BSY240_2159 Ku protein
BSY240_2161 Ku protein
BSY240_2160 ligD; DNA ligase D
BSY240_611 gyrA; DNA gyrase, A subunit
BSY240_2857 gyrB; DNA gyrase, B subunit
BSY240_1065 topA; DNA topoisomerase I
BSY240_3167 eukaryotic DNA topoisomerase I, catalytic core family protein
BSY240_1114 hupB; DNA-binding protein HRm
BSY240_1148 ihfA; integration host factor, alpha subunit
BSY240_2432 ihfB; integration host factor, beta subunit
BSY240_1462 recQ; ATP-dependent DNA helicase RecQ
BSY240_1074 impB/mucB/samB family protein
BSY240_701 lexA; repressor LexA
BSY240_2983 hypothetical protein
BSY240_2982 impB/mucB/samB family protein
BSY240_2980 dnaE; DNA polymerase III, alpha subunit
BSY240_2218 recX family protein
BSY240_2318 DEXH box helicase, DNA ligase-associated
BSY240_935 ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
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K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03648 UNG; uracil-DNA glycosylase [EC:3.2.2.27]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K03574 mutT; 8-oxo-dGTP diphosphatase [EC:3.6.1.55]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K10778 ada; AraC family transcriptional regulator, regulatory protein of adaptative response / methylated-DNA-[protein]-cysteine methyltransferase [EC:2.1.1.63]
K13530 adaA; AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase [EC:2.1.1.-]
K06876 phrB; (6-4)DNA photolyase [EC:4.1.99.13]
K03919 alkB; DNA oxidative demethylase [EC:1.14.11.33]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K01246 tag; DNA-3-methyladenine glycosylase I [EC:3.2.2.20]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03581 recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K06915 herA; DNA double-strand break repair helicase HerA and related ATPase
K10979 ku; DNA end-binding protein Ku
K10979 ku; DNA end-binding protein Ku
K01971 ligD; bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K03654 recQ; ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
K02346 dinB; DNA polymerase IV [EC:2.7.7.7]
K01356 lexA; repressor LexA [EC:3.4.21.88]
K14160 imuA; protein ImuA
K14161 imuB; protein ImuB
K14162 dnaE2; error-prone DNA polymerase [EC:2.7.7.7]
K03565 recX; regulatory protein
K03724 lhr; ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:agc03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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