KEGG   ORTHOLOGY: K06868
Entry
K06868                      KO                                     
Symbol
sepcysS
Name
Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73]
Pathway
map00970  Aminoacyl-tRNA biosynthesis
Reaction
R08577  O-phospho-L-seryl-tRNACys:hydrogen sulfide 2-aminopropanoate transferase
Brite
KEGG Orthology (KO) [BR:ko00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    K06868  sepcysS; Sep-tRNA:Cys-tRNA synthetase
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis
    K06868  sepcysS; Sep-tRNA:Cys-tRNA synthetase
Enzymes [BR:ko01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.73  O-phospho-L-seryl-tRNA:Cys-tRNA synthase
     K06868  sepcysS; Sep-tRNA:Cys-tRNA synthetase
Transfer RNA biogenesis [BR:ko03016]
 Prokaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    K06868  sepcysS; Sep-tRNA:Cys-tRNA synthetase
Other DBs
COG: COG1103
GO: 0043766
Genes
MJA: MJ_1678
MFE: Mefer_0975
MVU: Metvu_1276
MFS: MFS40622_0574
MIF: Metin_0086
MJH: JH146_1495
MESG: MLAUSG7_1199
MESA: MLASG1_0578
MIG: Metig_1345
MMP: MMP1240
MMD: GYY_07035
MMAK: MMKA1_14150(pscS) MMKA1_14320(pscS) MMKA1_14490(pscS) MMKA1_14660(pscS)
MMAO: MMOS7_13480(pscS)
MMAD: MMJJ_16050(pscS)
MAE: Maeo_0681
MVO: Mvol_0651
METF: CFE53_03625(pscS)
MTH: MTH_1067
MMG: MTBMA_c14550(pscS)
MTEE: MTTB_03670
METC: MTCT_0968
METE: tca_01031(iscS)
METK: FVF72_06255(pscS)
MTHM: FZP57_06960(pscS)
METJ: FZP68_03675(pscS)
METH: MBMB1_0325
MFC: BRM9_1944(pscS)
MCUB: MCBB_0296
METT: CIT01_03215(pscS)
METO: CIT02_05225(pscS)
MEME: HYG87_04490(pscS)
MEER: NKF70_07990(pscS)
MRID: FGU46_03655(pscS)
MFV: Mfer_0642
MKA: MK0229
FPL: Ferp_2023
GAC: GACE_1091
MBAR: MSBR2_2871
MAC: MA_0722
MMA: MM_1881
MMAC: MSMAC_1632
METM: MSMTP_2705
MHOR: MSHOH_3505
MFZ: AOB57_006010(pscS)
MHAB: RSJ42_00340(pscS) RSJ42_06680(pscS) RSJ42_09940(pscS)
MELO: J7W08_01470(pscS) J7W08_03050(pscS) J7W08_08590(pscS)
MZI: HWN40_11620(pscS)
MMAV: RE476_06830(pscS) RE476_12370(pscS)
MSEB: RE474_08485(pscS) RE474_12495(pscS)
MTP: Mthe_0102
MCJ: MCON_0570(pscS)
MHI: Mhar_0427
MRTJ: KHC33_04530(pscS) KHC33_15315(pscS)
MEMA: MMAB1_1094
MSUM: OH143_02280(pscS)
MRC: R6Y96_07420(pscS)
MPI: Mpet_1028
MEND: L6E24_11860(pscS)
MEFW: F1737_06595(pscS) F1737_11540(pscS)
MAQE: RJ40_10755(pscS)
MFK: E2N92_11000(pscS)
MOU: OU421_01745(pscS)
MESB: L1S32_05260(pscS)
MANQ: L1994_02105(pscS) L1994_03705(pscS)
MPD: MCP_0857
MJK: N2V74_00390(pscS) N2V74_05465(pscS)
MELU: MTLP_12980
MVJ: ACO0C9_01880(pscS)
BARC: AOA65_1061
BARB: AOA66_0045
 » show all
Reference
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
  Authors
Fukunaga R, Yokoyama S
  Title
Structural insights into the second step of RNA-dependent cysteine biosynthesis in archaea: crystal structure of Sep-tRNA:Cys-tRNA synthase from Archaeoglobus fulgidus.
  Journal
J Mol Biol 370:128-41 (2007)
DOI:10.1016/j.jmb.2007.04.050
  Sequence
[afu:AF_0028]
LinkDB

KEGG   ENZYME: 2.5.1.73
Entry
EC 2.5.1.73                 Enzyme                                 
Name
O-phospho-L-seryl-tRNA:Cys-tRNA synthase;
SepCysS;
Sep-tRNA:Cys-tRNA synthase
Class
Transferases;
Transferring alkyl or aryl groups, other than methyl groups;
Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
Sysname
O-phospho-L-seryl-tRNACys:hydrogen sulfide 2-aminopropanoate transferase
Reaction(IUBMB)
O-phospho-L-seryl-tRNACys + sulfide = L-cysteinyl-tRNACys + phosphate [RN:R08577]
Reaction(KEGG)
R08577
Substrate
O-phospho-L-seryl-tRNACys;
sulfide [CPD:C00283]
Product
L-cysteinyl-tRNA(Cys) [CPD:C03125];
phosphate [CPD:C00009]
Comment
In organisms like Archaeoglobus fulgidus lacking EC 6.1.1.16 (cysteine---tRNA ligase) for the direct Cys-tRNACys formation, Cys-tRNACys is produced by an indirect pathway, in which EC 6.1.1.27 (O-phosphoseryl-tRNA ligase) ligates O-phosphoserine to tRNACys, and EC 2.5.1.73 converts the produced O-phospho-L-seryl-tRNACys to Cys-tRNACys. The SepRS/SepCysS pathway is the sole route for cysteine biosynthesis in the organism [1]. Methanosarcina mazei can use both pathways, the direct route using EC 6.1.1.16 (cysteine---tRNA ligase) and the indirect pathway with EC 6.1.1.27 (O-phosphoseryl-tRNA ligase) and EC 2.5.1.73 [2].
History
EC 2.5.1.73 created 2009
Pathway
ec00970  Aminoacyl-tRNA biosynthesis
Orthology
K06868  Sep-tRNA:Cys-tRNA synthetase
Genes
MJAMJ_1678
MFEMefer_0975
MVUMetvu_1276
MFSMFS40622_0574
MIFMetin_0086
MJHJH146_1495
MESGMLAUSG7_1199
MESAMLASG1_0578
MIGMetig_1345
MMPMMP1240
MMQMmarC5_0351
MMXMmarC6_1433
MMZMmarC7_0486
MMDGYY_07035
MMAKMMKA1_14150(pscS) MMKA1_14320(pscS) MMKA1_14490(pscS) MMKA1_14660(pscS)
MMAOMMOS7_13480(pscS)
MMADMMJJ_16050(pscS)
MAEMaeo_0681
MVNMevan_0554
MVOMvol_0651
MOKMetok_0264
METFCFE53_03625(pscS)
MTHMTH_1067
MMGMTBMA_c14550(pscS)
MWOMWSIV6_1453
MTEEMTTB_03670
METCMTCT_0968
METEtca_01031(iscS)
METZMETMT2_1082
METKFVF72_06255(pscS)
MTHMFZP57_06960(pscS)
METJFZP68_03675(pscS)
MAROMarbSA_16340
MELMetbo_2382
MEWMSWAN_0264
METHMBMB1_0325
MFCBRM9_1944(pscS)
MFIDSM1535_0132
MCUBMCBB_0296
MSUBBK009_11800
METNBK008_07435
METTCIT01_03215(pscS)
METOCIT02_05225(pscS)
MEMEHYG87_04490(pscS)
MFEGGCM10025860_12110
MEERNKF70_07990(pscS)
MRIDFGU46_03655(pscS)
MFVMfer_0642
MKAMK0229
AFUAF_0028 AF_0181
AFGAFULGI_00000260
APOArcpr_0056
AVEArcve_1020
ASTAsulf_02152
FPLFerp_2023
GACGACE_1091
GAHGAH_00355 GAH_02061
MBAMbar_A1638
MBYMSBRM_2913
MBWMSBRW_3093
MBARMSBR2_2871
MBAKMSBR3_0854 MSBR3_1924
MACMA_0722
MMAMM_1881
MMAZMmTuc01_1956
MMJMSMAS_2806
MMACMSMAC_1632
MVCMSVAZ_1419 MSVAZ_2569
MEKMSKOL_1368 MSKOL_2576
MLSMSLAZ_0389
METMMSMTP_2705
MEFMSWH1_2638
MEQMSWHS_2397
MSJMSSAC_0667
MSZMSSIH_0610
MSWMSSIT_0641
MTHRMSTHT_0797 MSTHT_1396
MTHEMSTHC_1892 MSTHC_2472
MHORMSHOH_3505
MFZAOB57_006010(pscS)
MHABRSJ42_00340(pscS) RSJ42_06680(pscS) RSJ42_09940(pscS)
METWAAY43_00825
MBUMbur_0796 Mbur_1440
MMETMCMEM_0673 MCMEM_0928 MCMEM_1925
MELOJ7W08_01470(pscS) J7W08_03050(pscS) J7W08_08590(pscS)
MMHMmah_0384 Mmah_0699 Mmah_1745
MHAZBHR79_01585 BHR79_04975
MPOTBKM01_01065
MEVMetev_1356
MZHMzhil_1846
MPYMpsy_1019 Mpsy_2114
MZIHWN40_11620(pscS)
MMAVRE476_06830(pscS) RE476_12370(pscS)
MSEBRE474_08485(pscS) RE474_12495(pscS)
MHZMetho_0600 Metho_2240
MEHFMmiHf6_15840
MEESMmiEs2_01280
MTPMthe_0102
MCJMCON_0570(pscS)
MHIMhar_0427
MHUMhun_0071 Mhun_2180
MRTJKHC33_04530(pscS) KHC33_15315(pscS)
MLAMlab_0348 Mlab_1214
MEMMemar_1614
MBGBN140_0832
MEMAMMAB1_1094
MCHKMchiMG62_18000
MSUMOH143_02280(pscS)
MRCR6Y96_07420(pscS)
MPIMpet_1028
MENDL6E24_11860(pscS)
MEFWF1737_06595(pscS) F1737_11540(pscS)
MAQERJ40_10755(pscS)
MFKE2N92_11000(pscS)
MOUOU421_01745(pscS)
MESBL1S32_05260(pscS)
MANQL1994_02105(pscS) L1994_03705(pscS)
MBNMboo_1050 Mboo_2045
MFOMetfor_1987 Metfor_2473
MESKMETHP_01836
MPLMpal_1163 Mpal_1209
MPDMCP_0857
MEZMtc_1599 Mtc_2256
RCIRCIX1553 RCIX2270
MJKN2V74_00390(pscS) N2V74_05465(pscS)
MELUMTLP_12980
MVJACO0C9_01880(pscS)
BARCAOA65_1061
BARBAOA66_0045
 » show all
Reference
1  [PMID:17512006]
  Authors
Fukunaga R, Yokoyama S
  Title
Structural insights into the second step of RNA-dependent cysteine biosynthesis in archaea: crystal structure of Sep-tRNA:Cys-tRNA synthase from Archaeoglobus fulgidus.
  Journal
J Mol Biol 370:128-41 (2007)
DOI:10.1016/j.jmb.2007.04.050
  Sequence
[afu:AF_0028]
Reference
2  [PMID:18559341]
  Authors
Hauenstein SI, Perona JJ
  Title
Redundant synthesis of cysteinyl-tRNACys in Methanosarcina mazei.
  Journal
J Biol Chem 283:22007-17 (2008)
DOI:10.1074/jbc.M801839200
Reference
3  [PMID:17142313]
  Authors
Yuan J, Palioura S, Salazar JC, Su D, O'Donoghue P, Hohn MJ, Cardoso AM, Whitman WB, Soll D
  Title
RNA-dependent conversion of phosphoserine forms selenocysteine in eukaryotes and  archaea.
  Journal
Proc Natl Acad Sci U S A 103:18923-7 (2006)
DOI:10.1073/pnas.0609703104
Other DBs
ExplorEnz - The Enzyme Database: 2.5.1.73
IUBMB Enzyme Nomenclature: 2.5.1.73
ExPASy - ENZYME nomenclature database: 2.5.1.73
BRENDA, the Enzyme Database: 2.5.1.73
CAS: 1239229-21-0
LinkDB

KEGG   REACTION: R08577
Entry
R08577                      Reaction                               
Name
O-phospho-L-seryl-tRNACys:hydrogen sulfide 2-aminopropanoate transferase;
O-phosphoseryl-tRNA(Cys):hydrogen-sulfide 2-amino-2-[tRNA(Cys)-carbonyl]ethyltransferase
Definition
O-Phosphoseryl-tRNA(Cys) + Hydrogen sulfide <=> L-Cysteinyl-tRNA(Cys) + Orthophosphate
Equation
Comment
Sep-tRNA:Cys-tRNA synthetase
Reaction class
RC02948  C03125_C17022
Enzyme
Pathway
rn00970  Aminoacyl-tRNA biosynthesis
Brite
Enzymatic reactions [BR:br08201]
 2. Transferase reactions
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.73
     R08577  O-Phosphoseryl-tRNA(Cys) + Hydrogen sulfide <=> L-Cysteinyl-tRNA(Cys) + Orthophosphate
Orthology
K06868  Sep-tRNA:Cys-tRNA synthetase [EC:2.5.1.73]
Other DBs
RHEA: 25689
LinkDB

DBGET integrated database retrieval system