Salicibibacter kimchii: DT065_11890
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Entry
DT065_11890 CDS
T05571
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rue
Salicibibacter kimchii
Pathway
rue03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rue00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DT065_11890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rue03021
]
DT065_11890 (rpoC)
03400 DNA repair and recombination proteins [BR:
rue03400
]
DT065_11890 (rpoC)
Enzymes [BR:
rue01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DT065_11890 (rpoC)
Transcription machinery [BR:
rue03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DT065_11890 (rpoC)
DNA repair and recombination proteins [BR:
rue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DT065_11890 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Biotin_lipoyl
ApbA_C
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AXF57970
UniProt:
A0A345C439
LinkDB
All DBs
Position
2345046..2348663
Genome browser
AA seq
1205 aa
AA seq
DB search
MIDVNNFEYMKVGLASSDKIRNWSRGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTETGDTPLEYKQLLSEKEYRSYYDKYGRSFTAQMGAEAIRKILS
DLNLDQEVKALRDELETAQGQRRTRAIKRLEVLEAFRHSGNHPAWMIMDVLPIIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPITGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQCGLPKE
MALELFKPFVMKELVENGSAHNIKSAKRKVDRVQPEIWDVLEDVIKEHPVLLNRAPTLHR
LGIQSFEPVLVEGRAIHLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARVLMMSAQNIL
NPKDGNPVVTPSQDMVLGNYYLTAERKGAAGEGAIFKDSNEAITAYQNGYVHLHTRVAVS
VSSMENSIFPEKVKDQLLLTTIGKLIFNEILPSSFPYMNEPSAGNLINETPEKYFVPKGT
DVKNALAEKELVSPFKKGFLGDIIAEVFKKFQVTETSRMLDSMKDLGFYYSTKAGITVGI
SDVVVLPEKQQVIDNAEDKVNRVMKQFRRGLITEDERYDKVISIWSEAKDTIQERLMKTL
DTSNPIYMMSDSGSRGNASNFTQLAGMRGLMANPSGQIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLTVEALRDGTEVIEGLY
DRLIGRLAFQTVTHPDTGAKLVEKNELITEDTAKAIVDANVEKVTIRSAFACDTARGVCK
KCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQALITELEGTVSEIHDAGDKKDIIISGEIESKSYTTGYGARLRVAEGDHVEAG
QALTEGSIDPKELLKVTGIKEVKEYLLREVQKVYRMQGVGIGDKHVEVMVRQMLRKIRVN
DSGDTDVLPGTLVEVNHFDDVNKEVLRKNQRPAVGTPVILGITKASLETDSFLSAASFQE
TTRVLTDAAIKGRADALLGLKENVILGKLVPAGTGMQRYRSLKADSGEENMEETAEEPEG
ALSRR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
ttgatagatgtcaataattttgaatacatgaaagtcggccttgcttcttccgataagatc
cgcaattggtctagaggcgaagtgaaaaaacctgagaccatcaactaccggaccttgaaa
ccggagaaagatggcttgttttgtgaacgtattttcggcccgcaaaaggactgggagtgc
cattgcgggaaatataaacgcgttcgttataaaggagttgtctgtgaccgttgcggggtt
gaagtaacacgggcgaaagttcgccgtgagcgcatgggtcacattgaactggcagctccg
gtttcacacatttggtattttaaaggtatcccgagtcgaatggggctagttcttgatatg
tccccccgttcacttgaagaagtcatttatttcgcttcgtatgttgttacggaaacaggc
gacacgccgcttgaatataagcagttgctttccgaaaaagaatatcgctcgtattatgat
aaatacggacgttctttcactgcgcaaatgggtgcggaagcgattcgcaagatattgtcc
gatttaaatctcgatcaagaagtaaaagcgcttcgagatgaacttgaaacagcacaagga
cagcgtcgcacccgtgccattaaacgtttggaagtattggaagccttccgccattcgggg
aatcaccctgcctggatgatcatggacgtcctccctatcatcccgccggaattacgcccg
atggttcaattggatggcggtcggtttgctacttctgatttgaacgatttataccgtcgg
gtgattaaccgtaataatcgtttaaagcgtttgttggatctaggtgcgccaagtattatc
gtccaaaacgaaaaacgcatgcttcaggaagctgtagatgcgcttatcgacaacggaagg
cgcggtcggccgattaccgggccggggaaccgtccgttgaaatcactctcccacatgctc
aaaggaaaacagggacgattccgtcaaaaccttctcggaaaacgcgtagactactccggc
cgttccgttatcgtcgtagggccgagtttaaaaatgtatcagtgcggcctgccgaaagaa
atggcattggaattgtttaagccctttgttatgaaagagttggtggaaaatggttcggca
cataacatcaaaagtgccaaacgaaaggttgatcgagtccagccggaaatatgggacgtc
cttgaagatgtgatcaaagaacatccggtattgcttaaccgtgcgccaacgcttcacaga
ttgggaatccagtcgtttgaacctgtgctcgttgaaggtcgcgcgattcatttgcaccca
ctcgtctgtacggcttacaatgccgatttcgacggagaccaaatggccgtccacgttcca
ctatcggcagaggctcaagcggaagcgcgggttctaatgatgtctgcgcaaaacattcta
aatccaaaagacggaaacccggtcgttacgccttcgcaggatatggttctcggtaattac
taccttacggccgaacgaaaaggtgctgcaggtgagggagctatattcaaggacagcaat
gaggcgattacggcataccaaaatggttacgtgcatctgcatacacgtgtagctgtttcg
gtttcctcgatggaaaacagcatcttccccgaaaaagtgaaagaccagctgttactgacg
acgatcgggaaattgatattcaatgaaattttaccaagctcctttccgtatatgaatgaa
ccctctgctggcaacctgataaacgaaacaccggaaaaatattttgttccaaaaggaacg
gatgtaaaaaatgcgctagcggaaaaggaacttgtttctccatttaaaaaaggttttctc
ggcgacatcatcgctgaagtttttaagaaattccaagtgacggaaacgtcccggatgttg
gatagcatgaaagatcttggtttttactactcaacaaaagccgggattaccgtagggatt
tccgatgtggttgttcttcctgaaaaacagcaagttatcgataatgccgaggataaagta
aaccgtgtcatgaagcagtttaggcgcgggttgatcacggaagatgaaaggtacgacaaa
gtcatttccatttggagcgaagcaaaagacacgattcaagagcgactgatgaaaacacta
gatacttcgaacccgatctatatgatgagtgactccggttcccgcgggaacgcttcgaat
ttcactcagctggcaggcatgcgtgggctgatggcaaacccatccggacagatcatcgaa
ttgccgattaaatcaagttttcgagaaggactcactgtgctggaatactttatttccacc
catggcgcgcgtaaaggtttggcagacacagcgctgaaaaccgccgactccggttatttg
acccgccgtcttgtagacgtcgctcaagacgtcattgttcgtgaagatgactgtgggaca
gatcgagggcttaccgtcgaagcattacgagacggaacggaagttatcgaaggtctatac
gatcgcctgattgggcgattagcgtttcaaactgtcacgcaccctgataccggggctaaa
cttgtggaaaagaatgaattgatcacggaagacactgcgaaagcgatcgtcgatgcaaac
gttgaaaaagtaacgattcgctccgcctttgcatgtgatacagctcgtggagtttgtaaa
aaatgctatggccgaaacttggcaaccggcagtgatgttgaggttggagaagcagttggt
attatcgccgcgcaatccatcggtgagccggggacacagcttacaatgcgtacattccac
accggcggggtagccggcgacgatatcacgcaaggtctcccgcgtattcaagaactcttt
gaggctcgtaatccgaaagggcaggcgcttattaccgaacttgaaggtacggtaagcgag
attcacgatgcaggcgataagaaagacatcattatcagcggggaaattgaatcgaaatct
tatacaacaggctatggtgcgcgcctgcgtgttgcggaaggcgatcatgtcgaggccggc
caggcgctcacggagggctctattgatccgaaagagctgctgaaagtaaccgggatcaaa
gaagtaaaagaatacttgctcagggaagtccagaaagtatatcgtatgcagggcgtgggt
atcggcgataaacacgtagaagttatggttcggcagatgctccgtaaaatccgcgtgaac
gactccggtgatacggatgttctgcccggaacgttagtggaagtgaatcactttgatgat
gttaacaaagaagtgcttcgcaaaaatcagcgcccggcggttggtacacctgttatcctg
ggcatcacgaaagcttcccttgagaccgactctttcttgtcggcggcatccttccaggaa
acgactcgtgtccttacggatgcggcgatcaaaggaagagcagatgcattgctcggatta
aaagaaaacgtgattctcggaaaactcgttccggcaggcacaggcatgcaacgttatcgc
tccctcaaagcggacagtggcgaagaaaatatggaagaaaccgcagaagaaccagaaggt
gctctttcacgtcggtaa
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integrated database retrieval system
