KEGG   DISEASE: Xeroderma pigmentosum
Entry
H01428                      Disease                                
Name
Xeroderma pigmentosum
  Supergrp
Disorders of nucleotide excision repair [DS:H00403]
Description
Xeroderma pigmentosum (XP) is a rare autosomal-inherited, skin and neurodegenerative disease in which exposure to sunlight can result in a high incidence of skin and mucous membrane cancer. XP is classified into eight genetic complementation groups by the present. In this inside, 7 groups from the XP-A group to the G group show the abnormality in nucleotide excision repair (NER). The symptoms of XP begin in early life. Severe sunburn and blistering occurs in a half of patients, and all show early extensive freckling. Cancer incidence for individuals with XP under 20 years of age is 2,000 times as high as incidence in the general population. Neurodegeneration can be correlated with mutations in specific XP genes (XPA, ERCC3, ERCC2 and ERCC5).
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Multiple developmental anomalies or syndromes
   LD27  Syndromes with skin or mucosal anomalies as a major feature
    H01428  Xeroderma pigmentosum
Pathway-based classification of diseases [BR:br08402]
 Replication, repair and transcription
  nt06502  Nucleotide excision repair
   H01428  Xeroderma pigmentosum
  nt06508  Interstrand crosslink repair
   H01428  Xeroderma pigmentosum
Pathway
hsa03420  Nucleotide excision repair
Network
nt06502 Nucleotide excision repair
nt06508 Interstrand crosslink repair
Gene
(XPA) XPA [HSA:7507] [KO:K10847]
(XPB) ERCC3 [HSA:2071] [KO:K10843]
(XPC) XPC [HSA:7508] [KO:K10838]
(XPD) ERCC2 [HSA:2068] [KO:K10844]
(XPE) DDB2 [HSA:1643] [KO:K10140]
(XPF) ERCC4 [HSA:2072] [KO:K10848]
(XPG) ERCC5 [HSA:2073] [KO:K10846]
(XPJ) GTF2H4 [HSA:2968] [KO:K03144]
(XPV) POLH [HSA:5429] [KO:K03509]
Comment
Disorder of DNA repair system
Other DBs
ICD-11: LD27.1
MeSH: D014983
OMIM: 278700 610651 278720 278730 278740 278760 278780 621435 278750
Reference
  Authors
Cleaver JE, Lam ET, Revet I
  Title
Disorders of nucleotide excision repair: the genetic and molecular basis of heterogeneity.
  Journal
Nat Rev Genet 10:756-68 (2009)
DOI:10.1038/nrg2663
Reference
PMID:2234061 (XPA)
  Authors
Tanaka K, Miura N, Satokata I, Miyamoto I, Yoshida MC, Satoh Y, Kondo S, Yasui A, Okayama H, Okada Y
  Title
Analysis of a human DNA excision repair gene involved in group A xeroderma pigmentosum and containing a zinc-finger domain.
  Journal
Nature 348:73-6 (1990)
DOI:10.1038/348073a0
Reference
PMID:2167179 (XPB)
  Authors
Weeda G, van Ham RC, Vermeulen W, Bootsma D, van der Eb AJ, Hoeijmakers JH
  Title
A presumed DNA helicase encoded by ERCC-3 is involved in the human repair disorders xeroderma pigmentosum and Cockayne's syndrome.
  Journal
Cell 62:777-91 (1990)
DOI:10.1016/0092-8674(90)90122-u
Reference
PMID:8298653 (XPC)
  Authors
Li L, Bales ES, Peterson CA, Legerski RJ
  Title
Characterization of molecular defects in xeroderma pigmentosum group C.
  Journal
Nat Genet 5:413-7 (1993)
DOI:10.1038/ng1293-413
Reference
PMID:7849702 (XPD)
  Authors
Frederick GD, Amirkhan RH, Schultz RA, Friedberg EC
  Title
Structural and mutational analysis of the xeroderma pigmentosum group D (XPD) gene.
  Journal
Hum Mol Genet 3:1783-8 (1994)
DOI:10.1093/hmg/3.10.1783
Reference
PMID:8798680 (XPE)
  Authors
Nichols AF, Ong P, Linn S
  Title
Mutations specific to the xeroderma pigmentosum group E Ddb- phenotype.
  Journal
J Biol Chem 271:24317-20 (1996)
DOI:10.1074/jbc.271.40.24317
Reference
PMID:8797827 (XPF)
  Authors
Sijbers AM, de Laat WL, Ariza RR, Biggerstaff M, Wei YF, Moggs JG, Carter KC, Shell BK, Evans E, de Jong MC, Rademakers S, de Rooij J, Jaspers NG, Hoeijmakers JH, Wood RD
  Title
Xeroderma pigmentosum group F caused by a defect in a structure-specific DNA repair endonuclease.
  Journal
Cell 86:811-22 (1996)
DOI:10.1016/s0092-8674(00)80155-5
Reference
PMID:7951246 (XPG)
  Authors
Nouspikel T, Clarkson SG
  Title
Mutations that disable the DNA repair gene XPG in a xeroderma pigmentosum group G patient.
  Journal
Hum Mol Genet 3:963-7 (1994)
DOI:10.1093/hmg/3.6.963
Reference
PMID:40924475 (XPJ)
  Authors
Fassihi H, Mohammed S, Nakazawa Y, Fawcett H, Turner S, Palfrey J, Garrood I, Abiona A, Morley AM, Shimada M, Kato K, Lehmann AR, Ogi T
  Title
XP-J, a ninth xeroderma pigmentosum complementation group, results from mutations in GTF2H4, encoding TFIIH-p52 subunit.
  Journal
J Clin Invest 135:195731 (2025)
DOI:10.1172/JCI195731
Reference
PMID:10385124 (XPV)
  Authors
Masutani C, Kusumoto R, Yamada A, Dohmae N, Yokoi M, Yuasa M, Araki M, Iwai S, Takio K, Hanaoka F
  Title
The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase eta.
  Journal
Nature 399:700-4 (1999)
DOI:10.1038/21447
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KEGG   DISEASE: Cockayne syndrome
Entry
H00076                      Disease                                
Name
Cockayne syndrome
  Supergrp
Disorders of nucleotide excision repair [DS:H00403]
Description
Cockayne syndrome (CS) is a rare recessive disorder characterized by progressive multisystem abnormalities such as postnatal growth deficiency, progressive pigmentary retinopathy, sensorineural hearing loss, dental caries and neurological degeneration. CS has thus been classified as a segmental premature-aging syndrome. Two complementation groups (CSA and CSB) have been identified so far in CS cases. CSA caused by mutation in the gene encoding the group 8 excision-repair cross-complementing protein (ERCC8) is early childhood onset in the second year of life. CSB caused by mutation in the ERCC6 gene is late childhood onset with mild symptoms. ERCC8 encodes a Walker domain (WD)-repeat protein involved in the transcription-coupled repair system of the actively transcribed DNA. ERCC6 protein is at the interface of transcription and DNA repair and is involved in transcription-coupled and global genome-DNA repair, as well as in general transcription.
Category
Neurodegenerative disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  Multiple developmental anomalies or syndromes
   LD2B  Syndromes with premature ageing appearance as a major feature
    H00076  Cockayne syndrome
Pathway-based classification of diseases [BR:br08402]
 Replication, repair and transcription
  nt06502  Nucleotide excision repair
   H00076  Cockayne syndrome
  nt06508  Interstrand crosslink repair
   H00076  Cockayne syndrome
Pathway
hsa03420  Nucleotide excision repair
Network
nt06502 Nucleotide excision repair
nt06508 Interstrand crosslink repair
Gene
(CSA) ERCC8 [HSA:1161] [KO:K10570]
(CSB) ERCC6 [HSA:2074] [KO:K10841]
(XPB/CS) ERCC3 [HSA:2071] [KO:K10843]
(XPF/CS) ERCC4 [HSA:2072] [KO:K10848]
(XPG/CS) ERCC5 [HSA:2073] [KO:K10846]
Comment
Affected region: cerebral cortex, cerebellum, basal ganglia
Microscopic lesion: accumulate of DNA lesions, tigroid-type demyelination, multifocal calcium deposition
Other DBs
ICD-11: LD2B
MeSH: D003057
OMIM: 216400 133540 610651 278780
Reference
  Authors
Frosina G.
  Title
The current evidence for defective repair of oxidatively damaged DNA in Cockayne syndrome.
  Journal
Free Radic Biol Med 43:165-77 (2007)
DOI:10.1016/j.freeradbiomed.2007.04.001
Reference
PMID:17084038 (ERCC8)
  Authors
Kleppa L, Kanavin OJ, Klungland A, Stromme P
  Title
A novel splice site mutation in the Cockayne syndrome group A gene in two siblings with Cockayne syndrome.
  Journal
Neuroscience 145:1397-406 (2007)
DOI:10.1016/j.neuroscience.2006.09.025
Reference
PMID:14639525 (ERCC6)
  Authors
Licht CL, Stevnsner T, Bohr VA
  Title
Cockayne syndrome group B cellular and biochemical functions.
  Journal
Am J Hum Genet 73:1217-39 (2003)
DOI:10.1086/380399
Reference
PMID:16947863 (ERCC3)
  Authors
Oh KS, Khan SG, Jaspers NG, Raams A, Ueda T, Lehmann A, Friedmann PS, Emmert S, Gratchev A, Lachlan K, Lucassan A, Baker CC, Kraemer KH
  Title
Phenotypic heterogeneity in the XPB DNA helicase gene (ERCC3): xeroderma pigmentosum without and with Cockayne syndrome.
  Journal
Hum Mutat 27:1092-103 (2006)
DOI:10.1002/humu.20392
Reference
PMID:23623389 (ERCC4)
  Authors
Kashiyama K, Nakazawa Y, Pilz DT, Guo C, Shimada M, Sasaki K, Fawcett H, Wing JF, Lewin SO, Carr L, Li TS, Yoshiura K, Utani A, Hirano A, Yamashita S, Greenblatt D, Nardo T, Stefanini M, McGibbon D, Sarkany R, Fassihi H, Takahashi Y, Nagayama Y, Mitsutake N, Lehmann AR, Ogi T
  Title
Malfunction of nuclease ERCC1-XPF results in diverse clinical manifestations and causes Cockayne syndrome, xeroderma pigmentosum, and Fanconi anemia.
  Journal
Am J Hum Genet 92:807-19 (2013)
DOI:10.1016/j.ajhg.2013.04.007
Reference
PMID:8317483 (ERCC5)
  Authors
Vermeulen W, Jaeken J, Jaspers NG, Bootsma D, Hoeijmakers JH
  Title
Xeroderma pigmentosum complementation group G associated with Cockayne syndrome.
  Journal
Am J Hum Genet 53:185-92 (1993)
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KEGG   DISEASE: Trichothiodystrophy
Entry
H00866                      Disease                                
Name
Trichothiodystrophy
  Supergrp
Disorders of nucleotide excision repair [DS:H00403]
Description
Trichothiodystrophy (TTD) is a premature aging syndrome, with the hallmark feature of brittle hair and nails, ichthyosis, and progressive mental and physical retardation. Within photo-sensitive TTD, three TFIIH coding genes (ERCC2, ERCC3, and TTDA/GTF2H5) are implicated. Non-photosensitive trichothiodystrophy (TTDN) is characterized by short stature, intellectual impairment, sulfur-deficient brittle hair, and decreased male fertility but not cutaneous photosensitivity. Mutations in MPLKIP, RNF113A, and GTF2E2 have been reported.
Category
Skin disease
Brite
Human diseases in ICD-11 classification [BR:br08403]
 14 Diseases of the skin
  Genetic and developmental disorders affecting the skin
   EC21  Genetic defects of hair or hair growth
    H00866  Trichothiodystrophy
Pathway-based classification of diseases [BR:br08402]
 Replication, repair and transcription
  nt06502  Nucleotide excision repair
   H00866  Trichothiodystrophy
  nt06547  Spliceosome
   H00866  Trichothiodystrophy
Pathway
hsa03022  Basal transcription factors
hsa03420  Nucleotide excision repair
Network
nt06502 Nucleotide excision repair
nt06547 Spliceosome
Gene
(TTD1) ERCC2 [HSA:2068] [KO:K10844]
(TTD2) ERCC3 [HSA:2071] [KO:K10843]
(TTD3) GTF2H5 [HSA:404672] [KO:K10845]
(TTD4) MPLKIP [HSA:136647] [KO:K24575]
(TTD5) RNF113A [HSA:7737] [KO:K13127]
(TTD6) GTF2E2 [HSA:2961] [KO:K03137]
(TTD7) TARS1 [HSA:6897] [KO:K01868]
(TTD8) AARS1 [HSA:16] [KO:K01872]
(TTD9) MARS1 [HSA:4141] [KO:K01874]
Other DBs
ICD-11: EC21.1
MeSH: D054463
OMIM: 601675 616390 616395 234050 300953 616943 618546 619691 619692
Reference
PMID:9195225 (ERCC2)
  Authors
Takayama K, Danks DM, Salazar EP, Cleaver JE, Weber CA
  Title
DNA repair characteristics and mutations in the ERCC2 DNA repair and transcription gene in a trichothiodystrophy patient.
  Journal
Reference
PMID:9012405 (ERCC3)
  Authors
Weeda G, Eveno E, Donker I, Vermeulen W, Chevallier-Lagente O, Taieb A, Stary A, Hoeijmakers JH, Mezzina M, Sarasin A
  Title
A mutation in the XPB/ERCC3 DNA repair transcription gene, associated with trichothiodystrophy.
  Journal
Am J Hum Genet 60:320-9 (1997)
Reference
PMID:15220921 (GTF2H5)
  Authors
Giglia-Mari G, Coin F, Ranish JA, Hoogstraten D, Theil A, Wijgers N, Jaspers NG, Raams A, Argentini M, van der Spek PJ, Botta E, Stefanini M, Egly JM, Aebersold R, Hoeijmakers JH, Vermeulen W
  Title
A new, tenth subunit of TFIIH is responsible for the DNA repair syndrome trichothiodystrophy group A.
  Journal
Nat Genet 36:714-9 (2004)
DOI:10.1038/ng1387
Reference
PMID:15645389 (MPLKIP)
  Authors
Nakabayashi K, Amann D, Ren Y, Saarialho-Kere U, Avidan N, Gentles S, MacDonald JR, Puffenberger EG, Christiano AM, Martinez-Mir A, Salas-Alanis JC, Rizzo R, Vamos E, Raams A, Les C, Seboun E, Jaspers NG, Beckmann JS, Jackson CE, Scherer SW
  Title
Identification of C7orf11 (TTDN1) gene mutations and genetic heterogeneity in nonphotosensitive trichothiodystrophy.
  Journal
Am J Hum Genet 76:510-6 (2005)
DOI:10.1086/428141
Reference
PMID:25612912 (RNF113A)
  Authors
Corbett MA, Dudding-Byth T, Crock PA, Botta E, Christie LM, Nardo T, Caligiuri G, Hobson L, Boyle J, Mansour A, Friend KL, Crawford J, Jackson G, Vandeleur L, Hackett A, Tarpey P, Stratton MR, Turner G, Gecz J, Field M
  Title
A novel X-linked trichothiodystrophy associated with a nonsense mutation in RNF113A.
  Journal
J Med Genet 52:269-74 (2015)
DOI:10.1136/jmedgenet-2014-102418
Reference
PMID:26996949 (GTF2E2)
  Authors
Kuschal C, Botta E, Orioli D, Digiovanna JJ, Seneca S, Keymolen K, Tamura D, Heller E, Khan SG, Caligiuri G, Lanzafame M, Nardo T, Ricotti R, Peverali FA, Stephens R, Zhao Y, Lehmann AR, Baranello L, Levens D, Kraemer KH, Stefanini M
  Title
GTF2E2 Mutations Destabilize the General Transcription Factor Complex TFIIE in Individuals with DNA Repair-Proficient Trichothiodystrophy.
  Journal
Am J Hum Genet 98:627-42 (2016)
DOI:10.1016/j.ajhg.2016.02.008
Reference
PMID:31374204 (TARS1)
  Authors
Theil AF, Botta E, Raams A, Smith DEC, Mendes MI, Caligiuri G, Giachetti S, Bione S, Carriero R, Liberi G, Zardoni L, Swagemakers SMA, Salomons GS, Sarasin A, Lehmann A, van der Spek PJ, Ogi T, Hoeijmakers JHJ, Vermeulen W, Orioli D
  Title
Bi-allelic TARS Mutations Are Associated with Brittle Hair Phenotype.
  Journal
Am J Hum Genet 105:434-440 (2019)
DOI:10.1016/j.ajhg.2019.06.017
Reference
PMID:33909043 (AARS1 MARS1)
  Authors
Botta E, Theil AF, Raams A, Caligiuri G, Giachetti S, Bione S, Accadia M, Lombardi A, Smith DEC, Mendes MI, Swagemakers SMA, van der Spek PJ, Salomons GS, Hoeijmakers JHJ, Yesodharan D, Nampoothiri S, Ogi T, Lehmann AR, Orioli D, Vermeulen W
  Title
Protein instability associated with AARS1 and MARS1 mutations causes trichothiodystrophy.
  Journal
Hum Mol Genet 30:1711-1720 (2021)
DOI:10.1093/hmg/ddab123
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