KEGG   DISEASE: Syndromic neurodevelopmental disorder
Entry
H02459                      Disease                                
Name
Syndromic neurodevelopmental disorder
  Subgroup
NED with movement abnormalities or hypotonia [DS:H02397]
NED with dysmorphic facies [DS:H02535]
NED with microcephaly [DS:H02461]
NED with structural brain abnormalities [DS:H02470]
NED with absent language and variable seizures (NEDALVS)
NED with impaired intellectual development, hypotonia, and ataxia (NEDIDHA)
NED with impaired speech and hyperkinetic movements (NEDISHM)
NED with seizures and and speech and walking impairment (NEDSSWI)
NED with severe motor impairment and absent language (NEDMIAL)
NED with motor and speech delay and behavioral abnormalities (NEDMOSBA)
NED with seizures and gingival overgrowth (NEDSGO)
NED with early-onset generalized epilepsy (NEDEGE)
NED with speech delay and variable ocular anomalies (NEDSOA)
NED with language delay and behavioral abnormalities, with or without seizures (NEDLBAS)
NED with language delay and seizures (NEDLDS)
NED with poor growth and behavioral abnormalities (NEDGBA)
NED with language impairment, autism, and attention deficit-hyperactivity disorder (NEDLAAD)
NED plus optic atrophy (NEDOA)
Description
Syndromic neurodevelopmental disorder (NED) is a group of disorders that have a number of clinical features in addition to intellectual disability and developmental delay. Many genes that cause these syndromes have been identified to date.
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  LD90  Conditions with disorders of intellectual development as a relevant clinical feature
   H02459  Syndromic neurodevelopmental disorder
Pathway-based classification of diseases [BR:br08402]
 Cellular process
  nt06546  IgSF CAM signaling
   H02459  Syndromic neurodevelopmental disorder
Pathway
hsa04517 IGSF CAM signaling   
Network
nt06546 IgSF CAM signaling
Gene
(NEDALVS) WASF1 [HSA:8936] [KO:K05753]
(NEDIDHA) DOCK3 [HSA:1795] [KO:K05727]
(NEDISHM) ZNF142 [HSA:7701] [KO:K24851]
(NEDSSWI) DHPS [HSA:1725] [KO:K00809]
(NEDMIAL) DHX30 [HSA:22907] [KO:K13185]
(NEDMOSBA) TMEM222 [HSA:84065] [KO:K20726]
(NEDSGO) TBC1D2B [HSA:23102] [KO:K20166]
(NEDEGE) NBEA [HSA:26960] [KO:K24183]
(NEDSOA) THUMPD1 [HSA:55623] [KO:K06963]
(NEDLBAS) AGO1 [HSA:26523] [KO:K11593]
(NEDLDS) TIAM1 [HSA:7074] [KO:K05731]
(NEDGBA) ATP9A [HSA:10079] [KO:K26679]
(NEDLAAD) CAPRIN1 [HSA:4076] [KO:K18743]
(NEDOA) SNF8 [HSA:11267] [KO:K12188]
Other DBs
ICD-11: LD90.Y
OMIM: 618707 618292 618425 618088 618480 617804 617977 618651 618076 619470 619323 619157 619989 620292 619908 620242 620782 620784
Reference
PMID:29961568 (NEDALVS)
  Authors
Ito Y, Carss KJ, Duarte ST, Hartley T, Keren B, Kurian MA, Marey I, Charles P, Mendonca C, Nava C, Pfundt R, Sanchis-Juan A, van Bokhoven H, van Essen A, van Ravenswaaij-Arts C, Boycott KM, Kernohan KD, Dyack S, Raymond FL
  Title
De Novo Truncating Mutations in WASF1 Cause Intellectual Disability with Seizures.
  Journal
Am J Hum Genet 103:144-153 (2018)
DOI:10.1016/j.ajhg.2018.06.001
Reference
  Authors
Oegema R, Baillat D, Schot R, van Unen LM, Brooks A, Kia SK, Hoogeboom AJM, Xia Z, Li W, Cesaroni M, Lequin MH, van Slegtenhorst M, Dobyns WB, de Coo IFM, van den Berg D, Verheijen FW, Kremer A, van der Spek PJ, Heijsman D, Wagner EJ, Fornerod M, Mancini GMS
  Title
Correction: Human mutations in integrator complex subunits link transcriptome integrity to brain development.
  Journal
PLoS Genet 13:e1006923 (2017)
DOI:10.1371/journal.pgen.1006923
Reference
PMID:30976111 (NEDIDHA)
  Authors
Wiltrout K, Ferrer A, van de Laar I, Namekata K, Harada T, Klee EW, Zimmerman MT, Cousin MA, Kempainen JL, Babovic-Vuksanovic D, van Slegtenhorst MA, Aarts-Tesselaar CD, Schnur RE, Andrews M, Shinawi M
  Title
Variants in DOCK3 cause developmental delay and hypotonia.
  Journal
Eur J Hum Genet 27:1225-1234 (2019)
DOI:10.1038/s41431-019-0397-2
Reference
PMID:31036918 (NEDISHM)
  Authors
Khan K, Zech M, Morgan AT, Amor DJ, Skorvanek M, Khan TN, Hildebrand MS, Jackson VE, Scerri TS, Coleman M, Rigbye KA, Scheffer IE, Bahlo M, Wagner M, Lam DD, Berutti R, Havrankova P, Fecikova A, Strom TM, Han V, Dosekova P, Gdovinova Z, Laccone F, Jameel M, Mooney MR, Baig SM, Jech R, Davis EE, Katsanis N, Winkelmann J
  Title
Recessive variants in ZNF142 cause a complex neurodevelopmental disorder with intellectual disability, speech impairment, seizures, and dystonia.
  Journal
Genet Med 21:2532-2542 (2019)
DOI:10.1038/s41436-019-0523-0
Reference
PMID:30661771 (NEDSSWI)
  Authors
Ganapathi M, Padgett LR, Yamada K, Devinsky O, Willaert R, Person R, Au PB, Tagoe J, McDonald M, Karlowicz D, Wolf B, Lee J, Shen Y, Okur V, Deng L, LeDuc CA, Wang J, Hanner A, Mirmira RG, Park MH, Mastracci TL, Chung WK
  Title
Recessive Rare Variants in Deoxyhypusine Synthase, an Enzyme Involved in the Synthesis of Hypusine, Are Associated with a Neurodevelopmental Disorder.
  Journal
Am J Hum Genet 104:287-298 (2019)
DOI:10.1016/j.ajhg.2018.12.017
Reference
PMID:29304375 (NEDMIAL)
  Authors
Lessel D, Schob C, Kury S, Reijnders MRF, Harel T, Eldomery MK, Coban-Akdemir Z, Denecke J, Edvardson S, Colin E, Stegmann APA, Gerkes EH, Tessarech M, Bonneau D, Barth M, Besnard T, Cogne B, Revah-Politi A, Strom TM, Rosenfeld JA, Yang Y, Posey JE, Immken L, Oundjian N, Helbig KL, Meeks N, Zegar K, Morton J, The Ddd Study, Schieving JH, Claasen A, Huentelman M, Narayanan V, Ramsey K, Brunner HG, Elpeleg O, Mercier S, Bezieau S, Kubisch C, Kleefstra T, Kindler S, Lupski JR, Kreienkamp HJ
  Title
De Novo Missense Mutations in DHX30 Impair Global Translation and Cause a Neurodevelopmental Disorder.
  Journal
Am J Hum Genet 102:196 (2018)
DOI:10.1016/j.ajhg.2017.12.016
Reference
  Authors
Salpietro V, Dixon CL, Guo H, Bello OD, Vandrovcova J, Efthymiou S, Maroofian R, Heimer G, Burglen L, Valence S, Torti E, Hacke M, Rankin J, Tariq H, Colin E, Procaccio V, Striano P, Mankad K, Lieb A, Chen S, Pisani L, Bettencourt C, Mannikko R, Manole A, Brusco A, Grosso E, Ferrero GB, Armstrong-Moron J, Gueden S, Bar-Yosef O, Tzadok M, Monaghan KG, Santiago-Sim T, Person RE, Cho MT, Willaert R, Yoo Y, Chae JH, Quan Y, Wu H, Wang T, Bernier RA, Xia K, Blesson A, Jain M, Motazacker MM, Jaeger B, Schneider AL, Boysen K, Muir AM, Myers CT, Gavrilova RH, Gunderson L, Schultz-Rogers L, Klee EW, Dyment D, Osmond M, Parellada M, Llorente C, Gonzalez-Penas J, Carracedo A, Van Haeringen A, Ruivenkamp C, Nava C, Heron D, Nardello R, Iacomino M, Minetti C, Skabar A, Fabretto A, Raspall-Chaure M, Chez M, Tsai A, Fassi E, Shinawi M, Constantino JN, De Zorzi R, Fortuna S, Kok F, Keren B, Bonneau D, Choi M, Benzeev B, Zara F, Mefford HC, Scheffer IE, Clayton-Smith J, Macaya A, Rothman JE, Eichler EE, Kullmann DM, Houlden H
  Title
AMPA receptor GluA2 subunit defects are a cause of neurodevelopmental disorders.
  Journal
Nat Commun 10:3094 (2019)
DOI:10.1038/s41467-019-10910-w
Reference
PMID:29783990 (NEDMIAL)
  Authors
Vantroys E, Smet J, Vanlander AV, Vergult S, De Bruyne R, Roels F, Stepman H, Roeyers H, Menten B, Van Coster R
  Title
Severe hepatopathy and neurological deterioration after start of valproate treatment in a 6-year-old child with mitochondrial tryptophanyl-tRNA synthetase deficiency.
  Journal
Orphanet J Rare Dis 13:80 (2018)
DOI:10.1186/s13023-018-0822-6
Reference
PMID:33824500 (NEDMOSBA)
  Authors
Polla DL, Farazi Fard MA, Tabatabaei Z, Habibzadeh P, Levchenko OA, Nikuei P, Makrythanasis P, Hussain M, von Hardenberg S, Zeinali S, Fallah MS, Schuurs-Hoeijmakers JHM, Shahzad M, Fatima F, Fatima N, Kaat LD, Bruggenwirth HT, Fleming LR, Condie J, Ploski R, Pollak A, Pilch J, Demina NA, Chukhrova AL, Sergeeva VS, Venselaar H, Masri AT, Hamamy H, Santoni FA, Linda K, Ahmed ZM, Nadif Kasri N, de Brouwer APM, Bergmann AK, Hethey S, Yavarian M, Ansar M, Riazuddin S, Riazuddin S, Silawi M, Ruggeri G, Pirozzi F, Eftekhar E, Taghipour Sheshdeh A, Bahramjahan S, Mirzaa GM, Lavrov AV, Antonarakis SE, Faghihi MA, van Bokhoven H
  Title
Biallelic variants in TMEM222 cause a new autosomal recessive neurodevelopmental disorder.
  Journal
Genet Med 23:1246-1254 (2021)
DOI:10.1038/s41436-021-01133-w
Reference
PMID:32623794 (NEDSGO)
  Authors
Harms FL, Parthasarathy P, Zorndt D, Alawi M, Fuchs S, Halliday BJ, McKeown C, Sampaio H, Radhakrishnan N, Radhakrishnan SK, Gorce M, Navet B, Ziegler A, Sachdev R, Robertson SP, Nampoothiri S, Kutsche K
  Title
Biallelic loss-of-function variants in TBC1D2B cause a neurodevelopmental disorder with seizures and gingival overgrowth.
  Journal
Hum Mutat 41:1645-1661 (2020)
DOI:10.1002/humu.24071
Reference
PMID:30269351 (NEDEGE)
  Authors
Mulhern MS, Stumpel C, Stong N, Brunner HG, Bier L, Lippa N, Riviello J, Rouhl RPW, Kempers M, Pfundt R, Stegmann APA, Kukolich MK, Telegrafi A, Lehman A, Lopez-Rangel E, Houcinat N, Barth M, den Hollander N, Hoffer MJV, Weckhuysen S, Roovers J, Djemie T, Barca D, Ceulemans B, Craiu D, Lemke JR, Korff C, Mefford HC, Meyers CT, Siegler Z, Hiatt SM, Cooper GM, Bebin EM, Snijders Blok L, Veenstra-Knol HE, Baugh EH, Brilstra EH, Volker-Touw CML, van Binsbergen E, Revah-Politi A, Pereira E, McBrian D, Pacault M, Isidor B, Le Caignec C, Gilbert-Dussardier B, Bilan F, Heinzen EL, Goldstein DB, Stevens SJC, Sands TT
  Title
NBEA: Developmental disease gene with early generalized epilepsy phenotypes.
  Journal
Ann Neurol 84:788-795 (2018)
DOI:10.1002/ana.25350
Reference
PMID:35196516 (NEDSOA)
  Authors
Broly M, Polevoda BV, Awayda KM, Tong N, Lentini J, Besnard T, Deb W, O'Rourke D, Baptista J, Ellard S, Almannai M, Hashem M, Abdulwahab F, Shamseldin H, Al-Tala S, Alkuraya FS, Leon A, van Loon RLE, Ferlini A, Sanchini M, Bigoni S, Ciorba A, van Bokhoven H, Iqbal Z, Al-Maawali A, Al-Murshedi F, Ganesh A, Al-Mamari W, Lim SC, Pais LS, Brown N, Riazuddin S, Bezieau S, Fu D, Isidor B, Cogne B, O'Connell MR
  Title
THUMPD1 bi-allelic variants cause loss of tRNA acetylation and a syndromic neurodevelopmental disorder.
  Journal
Am J Hum Genet 109:587-600 (2022)
DOI:10.1016/j.ajhg.2022.02.001
Reference
PMID:34930816 (NEDLBAS)
  Authors
Schalk A, Cousin MA, Dsouza NR, Challman TD, Wain KE, Powis Z, Minks K, Trimouille A, Lasseaux E, Lacombe D, Angelini C, Michaud V, Van-Gils J, Spataro N, Ruiz A, Gabau E, Stolerman E, Washington C, Louie R, Lanpher BC, Kemppainen JL, Innes M, Kooy F, Meuwissen M, Goldenberg A, Lecoquierre F, Vera G, Diderich KEM, Sheidley B, El Achkar CM, Park M, Hamdan FF, Michaud JL, Lewis AJ, Zweier C, Reis A, Wagner M, Weigand H, Journel H, Keren B, Passemard S, Mignot C, van Gassen K, Brilstra EH, Itzikowitz G, O'Heir E, Allen J, Donald KA, Korf BR, Skelton T, Thompson M, Robin NH, Rudy NL, Dobyns WB, Foss K, Zarate YA, Bosanko KA, Alembik Y, Durand B, Tran Mau-Them F, Ranza E, Blanc X, Antonarakis SE, McWalter K, Torti E, Millan F, Dameron A, Tokita M, Zimmermann MT, Klee EW, Piton A, Gerard B
  Title
De novo coding variants in the AGO1 gene cause a neurodevelopmental disorder with intellectual disability.
  Journal
J Med Genet 59:965-975 (2022)
DOI:10.1136/jmedgenet-2021-107751
Reference
PMID:35240055 (NEDLDS)
  Authors
Lu S, Hernan R, Marcogliese PC, Huang Y, Gertler TS, Akcaboy M, Liu S, Chung HL, Pan X, Sun X, Oguz MM, Oztoprak U, de Baaij JHF, Ivanisevic J, McGinnis E, Guillen Sacoto MJ, Chung WK, Bellen HJ
  Title
Loss-of-function variants in TIAM1 are associated with developmental delay, intellectual disability, and seizures.
  Journal
Am J Hum Genet 109:571-586 (2022)
DOI:10.1016/j.ajhg.2022.01.020
Reference
PMID:34764295 (NEDGBA)
  Authors
Mattioli F, Darvish H, Paracha SA, Tafakhori A, Firouzabadi SG, Chapi M, Baig HMA, Reymond A, Antonarakis SE, Ansar M
  Title
Biallelic truncation variants in ATP9A are associated with a novel autosomal recessive neurodevelopmental disorder.
  Journal
NPJ Genom Med 6:94 (2021)
DOI:10.1038/s41525-021-00255-z
Reference
PMID:35979925 (NEDLAAD)
  Authors
Pavinato L, Delle Vedove A, Carli D, Ferrero M, Carestiato S, Howe JL, Agolini E, Coviello DA, van de Laar I, Au PYB, Di Gregorio E, Fabbiani A, Croci S, Mencarelli MA, Bruno LP, Renieri A, Veltra D, Sofocleous C, Faivre L, Mazel B, Safraou H, Denomme-Pichon AS, van Slegtenhorst MA, Giesbertz N, van Jaarsveld RH, Childers A, Rogers RC, Novelli A, De Rubeis S, Buxbaum JD, Scherer SW, Ferrero GB, Wirth B, Brusco A
  Title
CAPRIN1 haploinsufficiency causes a neurodevelopmental disorder with language impairment, ADHD and ASD.
  Journal
Brain 146:534-548 (2023)
DOI:10.1093/brain/awac278
Reference
PMID:38423010 (NEDOA)
  Authors
Brugger M, Lauri A, Zhen Y, Gramegna LL, Zott B, Sekulic N, Fasano G, Kopajtich R, Cordeddu V, Radio FC, Mancini C, Pizzi S, Paradisi G, Zanni G, Vasco G, Carrozzo R, Palombo F, Tonon C, Lodi R, La Morgia C, Arelin M, Blechschmidt C, Finck T, Sorensen V, Kreiser K, Strobl-Wildemann G, Daum H, Michaelson-Cohen R, Ziccardi L, Zampino G, Prokisch H, Abou Jamra R, Fiorini C, Arzberger T, Winkelmann J, Caporali L, Carelli V, Stenmark H, Tartaglia M, Wagner M
  Title
Bi-allelic variants in SNF8 cause a disease spectrum ranging from severe developmental and epileptic encephalopathy to syndromic optic atrophy.
  Journal
Am J Hum Genet 111:594-613 (2024)
DOI:10.1016/j.ajhg.2024.02.005
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