KEGG   DISEASE: Neurodevelopmental disorder with histone modification defect
Entry
H02803                      Disease                                
Name
Neurodevelopmental disorder with histone modification defect
  Subgroup
Shashi-Pena syndrome (SHAPNS) [DS:H02855]
O'Donnell-Luria-Rodan syndrome (ODLURO)
NED with central hypotonia and dysmorphic facies (NEDCHF)
NED with dysmorphic facies and thin corpus callosum (NEDDFAC)
NED with speech impairment and dysmorphic facies (NEDSID)
NED-craniofacial syndrome with variable renal and cardiac abnormalities (NECRC)
NED with dysmorphic facies, sleep disturbance, and brain abnormalities (NEDFASB)
Stolerman neurodevelopmental syndrome (NEDSST)
El Hayek-Chahrour neurodevelopmental disorder (NEDEHC)
NED with dysmorphic facies and distal limb anomalies (NEDDFL)
Nil-Deshwan neurodevelopmental syndrome (NDNS)
  Supergrp
Neurodevelopmental disorder with dysmorphic facies [DS:H02535]
Syndromic neurodevelopmental disorder [DS:H02459]
Description
Epigenetic regulatory mechanisms, including histone modification, play critical roles in cell differentiation and organ development through spatial and temporal gene regulation. Many neurodevelopmental disorders caused by mutations in genes encoding components of the histone modification machinery have been reported.
Category
Congenital malformation
Brite
Human diseases in ICD-11 classification [BR:br08403]
 20 Developmental anomalies
  LD90  Conditions with disorders of intellectual development as a relevant clinical feature
   H02803  Neurodevelopmental disorder with histone modification defect
Gene
(SHAPNS) ASXL2 [HSA:55252] [KO:K11471]
(ODLURO) KMT2E [HSA:55904] [KO:K09189]
(NEDCHF) HDAC4 [HSA:9759] [KO:K11406]
(NEDDFAC) SUPT16H [HSA:11198] [KO:K25639]
(NEDSID) SETD1A [HSA:9739] [KO:K11422]
(NECRC) ZMYM2 [HSA:7750] [KO:K24675]
(NEDFASB) KAT5 [HSA:10524] [KO:K11304]
(NEDSST) KDM6B [HSA:23135] [KO:K11448]
(NEDEHC) KDM5A [HSA:5927] [KO:K11446]
(NEDDFL) BPTF [HSA:2186] [KO:K11728]
(NDNS) DOT1L [HSA:84444] [KO:K11427]
Other DBs
ICD-11: LD90.Y
OMIM: 617190 618512 619797 619480 619056 619522 619103 618505 620820 617755 621265
Reference
  Authors
Park J, Lee K, Kim K, Yi SJ
  Title
The role of histone modifications: from neurodevelopment to neurodiseases.
  Journal
Signal Transduct Target Ther 7:217 (2022)
DOI:10.1038/s41392-022-01078-9
Reference
PMID:27693232 (SHAPNS)
  Authors
Shashi V, Pena LD, Kim K, Burton B, Hempel M, Schoch K, Walkiewicz M, McLaughlin HM, Cho M, Stong N, Hickey SE, Shuss CM, Freemark MS, Bellet JS, Keels MA, Bonner MJ, El-Dairi M, Butler M, Kranz PG, Stumpel CT, Klinkenberg S, Oberndorff K, Alawi M, Santer R, Petrovski S, Kuismin O, Korpi-Heikkila S, Pietilainen O, Aarno P, Kurki MI, Hoischen A, Need AC, Goldstein DB, Kortum F
  Title
De Novo Truncating Variants in ASXL2 Are Associated with a Unique and Recognizable Clinical Phenotype.
  Journal
Am J Hum Genet 99:991-999 (2016)
DOI:10.1016/j.ajhg.2016.08.017
Reference
PMID:31079897 (ODLURO)
  Authors
O'Donnell-Luria AH, Pais LS, Faundes V, Wood JC, Sveden A, Luria V, Abou Jamra R, Accogli A, Amburgey K, Anderlid BM, Azzarello-Burri S, Basinger AA, Bianchini C, Bird LM, Buchert R, Carre W, Ceulemans S, Charles P, Cox H, Culliton L, Curro A, Demurger F, Dowling JJ, Duban-Bedu B, Dubourg C, Eiset SE, Escobar LF, Ferrarini A, Haack TB, Hashim M, Heide S, Helbig KL, Helbig I, Heredia R, Heron D, Isidor B, Jonasson AR, Joset P, Keren B, Kok F, Kroes HY, Lavillaureix A, Lu X, Maas SM, Maegawa GHB, Marcelis CLM, Mark PR, Masruha MR, McLaughlin HM, McWalter K, Melchinger EU, Mercimek-Andrews S, Nava C, Pendziwiat M, Person R, Ramelli GP, Ramos LLP, Rauch A, Reavey C, Renieri A, Riess A, Sanchez-Valle A, Sattar S, Saunders C, Schwarz N, Smol T, Srour M, Steindl K, Syrbe S, Taylor JC, Telegrafi A, Thiffault I, Trauner DA, van der Linden H Jr, van Koningsbruggen S, Villard L, Vogel I, Vogt J, Weber YG, Wentzensen IM, Widjaja E, Zak J, Baxter S, Banka S, Rodan LH
  Title
Heterozygous Variants in KMT2E Cause a Spectrum of Neurodevelopmental Disorders and Epilepsy.
  Journal
Am J Hum Genet 104:1210-1222 (2019)
DOI:10.1016/j.ajhg.2019.03.021
Reference
PMID:33537682 (NEDCHF)
  Authors
Wakeling E, McEntagart M, Bruccoleri M, Shaw-Smith C, Stals KL, Wakeling M, Barnicoat A, Beesley C, Hanson-Kahn AK, Kukolich M, Stevenson DA, Campeau PM, Ellard S, Elsea SH, Yang XJ, Caswell RC
  Title
Missense substitutions at a conserved 14-3-3 binding site in HDAC4 cause a novel intellectual disability syndrome.
  Journal
HGG Adv 2:100015 (2021)
DOI:10.1016/j.xhgg.2020.100015
Reference
PMID:31924697 (NEDDFAC)
  Authors
Bina R, Matalon D, Fregeau B, Tarsitano JJ, Aukrust I, Houge G, Bend R, Warren H, Stevenson RE, Stuurman KE, Barkovich AJ, Sherr EH
  Title
De novo variants in SUPT16H cause neurodevelopmental disorders associated with corpus callosum abnormalities.
  Journal
J Med Genet 57:461-465 (2020)
DOI:10.1136/jmedgenet-2019-106193
Reference
PMID:26974950 (NEDSID)
  Authors
Singh T, Kurki MI, Curtis D, Purcell SM, Crooks L, McRae J, Suvisaari J, Chheda H, Blackwood D, Breen G, Pietilainen O, Gerety SS, Ayub M, Blyth M, Cole T, Collier D, Coomber EL, Craddock N, Daly MJ, Danesh J, DiForti M, Foster A, Freimer NB, Geschwind D, Johnstone M, Joss S, Kirov G, Korkko J, Kuismin O, Holmans P, Hultman CM, Iyegbe C, Lonnqvist J, Mannikko M, McCarroll SA, McGuffin P, McIntosh AM, McQuillin A, Moilanen JS, Moore C, Murray RM, Newbury-Ecob R, Ouwehand W, Paunio T, Prigmore E, Rees E, Roberts D, Sambrook J, Sklar P, St Clair D, Veijola J, Walters JT, Williams H, Sullivan PF, Hurles ME, O'Donovan MC, Palotie A, Owen MJ, Barrett JC
  Title
Rare loss-of-function variants in SETD1A are associated with schizophrenia and developmental disorders.
  Journal
Nat Neurosci 19:571-7 (2016)
DOI:10.1038/nn.4267
Reference
PMID:32891193 (NECRC)
  Authors
Connaughton DM, Dai R, Owen DJ, Marquez J, Mann N, Graham-Paquin AL, Nakayama M, Coyaud E, Laurent EMN, St-Germain JR, Blok LS, Vino A, Klambt V, Deutsch K, Wu CW, Kolvenbach CM, Kause F, Ottlewski I, Schneider R, Kitzler TM, Majmundar AJ, Buerger F, Onuchic-Whitford AC, Youying M, Kolb A, Salmanullah D, Chen E, van der Ven AT, Rao J, Ityel H, Seltzsam S, Rieke JM, Chen J, Vivante A, Hwang DY, Kohl S, Dworschak GC, Hermle T, Alders M, Bartolomaeus T, Bauer SB, Baum MA, Brilstra EH, Challman TD, Zyskind J, Costin CE, Dipple KM, Duijkers FA, Ferguson M, Fitzpatrick DR, Fick R, Glass IA, Hulick PJ, Kline AD, Krey I, Kumar S, Lu W, Marco EJ, Wentzensen IM, Mefford HC, Platzer K, Povolotskaya IS, Savatt JM, Shcherbakova NV, Senguttuvan P, Squire AE, Stein DR, Thiffault I, Voinova VY, Somers MJG, Ferguson MA, Traum AZ, Daouk GH, Daga A, Rodig NM, Terhal PA, van Binsbergen E, Eid LA, Tasic V, Rasouly HM, Lim TY, Ahram DF, Gharavi AG, Reutter HM, Rehm HL, MacArthur DG, Lek M, Laricchia KM, Lifton RP, Xu H, Mane SM, Sanna-Cherchi S, Sharrocks AD, Raught B, Fisher SE, Bouchard M, Khokha MK, Shril S, Hildebrandt F
  Title
Mutations of the Transcriptional Corepressor ZMYM2 Cause Syndromic Urinary Tract Malformations.
  Journal
Am J Hum Genet 107:727-742 (2020)
DOI:10.1016/j.ajhg.2020.08.013
Reference
PMID:32822602 (NEDFASB)
  Authors
Humbert J, Salian S, Makrythanasis P, Lemire G, Rousseau J, Ehresmann S, Garcia T, Alasiri R, Bottani A, Hanquinet S, Beaver E, Heeley J, Smith ACM, Berger SI, Antonarakis SE, Yang XJ, Cote J, Campeau PM
  Title
De Novo KAT5 Variants Cause a Syndrome with Recognizable Facial Dysmorphisms, Cerebellar Atrophy, Sleep Disturbance, and Epilepsy.
  Journal
Am J Hum Genet 107:564-574 (2020)
DOI:10.1016/j.ajhg.2020.08.002
Reference
PMID:31124279 (NEDSST)
  Authors
Stolerman ES, Francisco E, Stallworth JL, Jones JR, Monaghan KG, Keller-Ramey J, Person R, Wentzensen IM, McWalter K, Keren B, Heron B, Nava C, Heron D, Kim K, Burton B, Al-Musafri F, O'Grady L, Sahai I, Escobar LF, Meuwissen M, Reyniers E, Kooy F, Lacassie Y, Gunay-Aygun M, Schatz KS, Hochstenbach R, Zwijnenburg PJG, Waisfisz Q, van Slegtenhorst M, Mancini GMS, Louie RJ
  Title
Genetic variants in the KDM6B gene are associated with neurodevelopmental delays and dysmorphic features.
  Journal
Am J Med Genet A 179:1276-1286 (2019)
DOI:10.1002/ajmg.a.61173
Reference
PMID:33350388 (NEDEHC)
  Authors
El Hayek L, Tuncay IO, Nijem N, Russell J, Ludwig S, Kaur K, Li X, Anderton P, Tang M, Gerard A, Heinze A, Zacher P, Alsaif HS, Rad A, Hassanpour K, Abbaszadegan MR, Washington C, DuPont BR, Louie RJ, Couse M, Faden M, Rogers RC, Abou Jamra R, Elias ER, Maroofian R, Houlden H, Lehman A, Beutler B, Chahrour MH
  Title
KDM5A mutations identified in autism spectrum disorder using forward genetics.
  Journal
Elife 9:56883 (2020)
DOI:10.7554/eLife.56883
Reference
PMID:28942966 (NEDDFL)
  Authors
Stankiewicz P, Khan TN, Szafranski P, Slattery L, Streff H, Vetrini F, Bernstein JA, Brown CW, Rosenfeld JA, Rednam S, Scollon S, Bergstrom KL, Parsons DW, Plon SE, Vieira MW, Quaio CRDC, Baratela WAR, Acosta Guio JC, Armstrong R, Mehta SG, Rump P, Pfundt R, Lewandowski R, Fernandes EM, Shinde DN, Tang S, Hoyer J, Zweier C, Reis A, Bacino CA, Xiao R, Breman AM, Smith JL, Katsanis N, Bostwick B, Popp B, Davis EE, Yang Y
  Title
Haploinsufficiency of the Chromatin Remodeler BPTF Causes Syndromic Developmental and Speech Delay, Postnatal Microcephaly, and Dysmorphic Features.
  Journal
Am J Hum Genet 101:503-515 (2017)
DOI:10.1016/j.ajhg.2017.08.014
Reference
PMID:37827158 (NDNS)
  Authors
Nil Z, Deshwar AR, Huang Y, Barish S, Zhang X, Choufani S, Le Quesne Stabej P, Hayes I, Yap P, Haldeman-Englert C, Wilson C, Prescott T, Tveten K, Vollo A, Haynes D, Wheeler PG, Zon J, Cytrynbaum C, Jobling R, Blyth M, Banka S, Afenjar A, Mignot C, Robin-Renaldo F, Keren B, Kanca O, Mao X, Wegner DJ, Sisco K, Shinawi M, Wangler MF, Weksberg R, Yamamoto S, Costain G, Bellen HJ
  Title
Rare de novo gain-of-function missense variants in DOT1L are associated with developmental delay and congenital anomalies.
  Journal
Am J Hum Genet 110:1919-1937 (2023)
DOI:10.1016/j.ajhg.2023.09.009
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