KEGG   PATHWAY: aam03030
Entry
aam03030                    Pathway                                
Name
DNA replication - Apteryx mantelli mantelli (North Island brown kiwi)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
aam03030  DNA replication
aam03030

Organism
Apteryx mantelli mantelli (North Island brown kiwi) [GN:aam]
Gene
106482030  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
106482224  RFC4; replication factor C subunit 4 [KO:K10755]
106482774  MCM2; minichromosome maintenance complex component 2 [KO:K02540] [EC:5.6.2.3]
106483524  RPA3; replication protein A3 [KO:K10740]
106483931  [KO:K02328]
106484160  POLD3; DNA polymerase delta 3, accessory subunit [KO:K03504]
106484371  FEN1; flap structure-specific endonuclease 1 [KO:K04799] [EC:3.1.-.-]
106484718  RPA2; replication protein A2 [KO:K10739]
106484790  MCM7; minichromosome maintenance complex component 7 [KO:K02210] [EC:5.6.2.3]
106486972  DNA2; DNA replication helicase/nuclease 2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
106487017  POLE3; DNA polymerase epsilon 3, accessory subunit [KO:K02326] [EC:2.7.7.7]
106487022  POLE2; DNA polymerase epsilon 2, accessory subunit [KO:K02325] [EC:2.7.7.7]
106487395  POLE; DNA polymerase epsilon, catalytic subunit [KO:K02324] [EC:2.7.7.7]
106487714  RPA1; replication protein A1 [KO:K07466]
106488827  MCM5; minichromosome maintenance complex component 5 [KO:K02209] [EC:5.6.2.3]
106489164  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
106490105  RFC1; replication factor C subunit 1 [KO:K10754]
106492264  POLA1; DNA polymerase alpha 1, catalytic subunit [KO:K02320] [EC:2.7.7.7]
106492497  PRIM2; primase (DNA) subunit 2 [KO:K02685]
106492989  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
106493865  [KO:K10755]
106494367  POLA2; DNA polymerase alpha 2, accessory subunit [KO:K02321]
106494391  MCM4; minichromosome maintenance complex component 4 [KO:K02212] [EC:5.6.2.3]
106497470  RFC5; replication factor C subunit 5 [KO:K10756]
106497608  [KO:K10755]
106497611  RFC2; replication factor C subunit 2 [KO:K10755]
106498425  MCM6; minichromosome maintenance complex component 6 [KO:K02542] [EC:5.6.2.3]
106500451  RFC3; replication factor C subunit 3 [KO:K10756]
106500523  MCM3; minichromosome maintenance complex component 3 [KO:K02541] [EC:5.6.2.3]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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