Acidaminococcus fermentans: Acfer_0615
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Entry
Acfer_0615 CDS
T01151
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
afn
Acidaminococcus fermentans
Pathway
afn03030
DNA replication
afn03410
Base excision repair
afn03420
Nucleotide excision repair
afn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
afn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Acfer_0615
03410 Base excision repair
Acfer_0615
03420 Nucleotide excision repair
Acfer_0615
03430 Mismatch repair
Acfer_0615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afn03032
]
Acfer_0615
03400 DNA repair and recombination proteins [BR:
afn03400
]
Acfer_0615
Enzymes [BR:
afn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Acfer_0615
DNA replication proteins [BR:
afn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Acfer_0615
DNA repair and recombination proteins [BR:
afn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Acfer_0615
NER (nucleotide excision repair)
GGR (global genome repair) factors
Acfer_0615
MMR (mismatch excision repair)
DNA ligase
Acfer_0615
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Acfer_0615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
RNA_ligase
HHH
zf-tcix
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ADB47009
UniProt:
D2RIV7
LinkDB
All DBs
Position
718969..720996
Genome browser
AA seq
675 aa
AA seq
DB search
MSEMTKEAAAARIDQLRAVMKKNSYLYYVQDNPLITDAEYDAMMRELKALEAEYPELVTP
DSPSQHVGGYAKPGFTEVRHMTPLLSLANAFSPEEMEEFDRRVHEGLPQDVKVQYVVEPK
IDGLACSIIYENGRFVRAATRGDGVVGENVTENVRTIANIPKVLKPIPGIEIPELLDVRG
EVYMPRQAFVKLNEERQEAGEQEFANCRNAAAGSLRQLDPRVTARRSLAFFAYGVGVGAG
NLPTHNASMDMLQQYGFTTTEGRTLVDTIQEANELIKKHGERRAVLGYDTDGVVVKVNDV
WQQNILGATGKDPRWAMAYKFPPEQAETLLEDIVIQVGRTGVLTPTAVLRPVRLSGSTIS
RATLHNEDFIRERDIRIGDHVIINKAAEIIPEVLRVVPEKRTGEEKEFHMPETCPECGWK
VERKAGEAAWRCTNPHCPALGREGLIHFTSRDAMNIDGCGPSVLAQLTAAGLVKDPGDLY
LLTREQVETLDRMGPKSADNLVSAIAASKNQSLDKLLFALGIRHVGAKVAHTLARKYGTM
DKLMAADQEDLAQTPDIGPVIAESVVTWFADPMNQAYVERLKELGLNMEMTSGPAQDENH
PFYGKTLVFTGTLPTLDRATAKTMAQEVGAKVTGSVSKKTDYVVAGADPGSKYTKAQSLG
VTILDEAEFLRMMGR
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatgacgaaagaggcggcggcagcccggatcgaccagctgcgggctgtcatg
aagaaaaattcctatttgtattatgtccaggacaatcccctgatcaccgatgcggaatac
gacgccatgatgcgggaactgaaggccctggaagcagagtatccggaactggtgacgccg
gattctcccagccagcatgtggggggctatgccaagcccgggttcacggaagtccggcat
atgacgcctctgttgagcctggccaacgctttttccccggaagagatggaagaattcgac
cggcgggtccatgaagggctgcctcaggatgtcaaagtccagtatgtggtggagcccaag
attgacgggctggcctgcagcatcatctacgaaaacggccggttcgtccgggctgctacc
cggggggacggagtggtgggagaaaacgtcacggaaaacgtccggaccatcgccaacatc
cccaaggtgctgaagcccattccggggatagaaatcccggaactgctggatgtgcgggga
gaagtgtacatgccccggcaggctttcgtgaagctgaatgaggaacggcaggaagccggg
gagcaggaattcgccaactgccggaatgcggcggccggttccctgcgccagctggatccc
cgggtcaccgcccggcggtccctggccttctttgcctatggcgtgggggtgggagccggc
aacctgcccacccacaacgcttccatggatatgctccagcagtacgggtttaccaccacc
gaagggcggacactggtggacaccatccaggaagccaatgaactgattaaaaaacacgga
gagcgccgggccgtcctgggctacgataccgatggggtggtggtgaaggtaaacgacgtg
tggcagcagaacatcctgggagccaccggcaaagatccccgctgggccatggcttacaag
ttcccgccggaacaggcggagactctgctggaagacatagtgatccaggtgggacgcacc
ggggtgctgacccctactgcagtgctccggccggtgcggctctccggcagcaccatcagc
cgggccaccctccacaacgaagatttcatcagggaacgggacatccggatcggggaccat
gtaatcatcaacaaggctgcggaaatcatcccggaagtgctccgggtggtgccggaaaag
cgcaccggggaagaaaaggaattccacatgccggaaacctgcccggaatgcggctggaag
gtggaacggaaagccggggaggcggcctggcgctgcaccaatccccactgcccggctctg
ggacgggaaggactgatccatttcaccagccgggacgccatgaacatcgacggctgcggg
cccagcgtgctggcccagcttaccgccgccggactggtgaaggacccgggggacctgtac
ctgctgacccgggaacaggtggagaccctggaccggatggggccgaaaagcgcggacaac
ctggtgagtgccattgcagccagcaaaaaccagagcctggacaagctgctgtttgccctg
ggaatccgccatgtgggggccaaggtggcccataccctggcccggaaatacggaaccatg
gacaagctcatggccgctgatcaggaagacctggcccagacaccggacatcgggccggtg
attgcggaaagcgtggtcacctggtttgccgatcccatgaaccaggcctatgtggaacgg
ctgaaggaactggggctgaacatggagatgacctccggaccggcccaggacgagaaccat
cccttctatgggaagaccctggtgttcaccggcaccctgcccaccctggaccgggccact
gccaaaaccatggcccaggaagtgggagccaaggtcaccggcagcgtgagcaaaaagacc
gactatgtggtggccggcgccgacccgggcagcaaatacaccaaagcccagagcctgggt
gtgaccatcctggacgaagcggagttcctgcggatgatggggaggtaa
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