KEGG   PATHWAY: ahr00920
Entry
ahr00920                    Pathway                                
Name
Sulfur metabolism - Aeromonas hydrophila subsp. hydrophila AL09-71
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
ahr00920  Sulfur metabolism
ahr00920

Module
ahr_M00021  Cysteine biosynthesis, serine => cysteine [PATH:ahr00920]
ahr_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:ahr00920]
Other DBs
GO: 0006790
Organism
Aeromonas hydrophila subsp. hydrophila AL09-71 [GN:ahr]
Gene
V428_03245  sulfate transporter subunit [KO:K23163]
V428_03255  sulfate transporter [KO:K02046]
V428_03260  sulfate ABC transporter permease [KO:K02047]
V428_03265  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
V428_19615  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
V428_19620  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
V428_19605  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
V428_03140  3'-5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
V428_19265  adenosine-3'(2'),5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
V428_18675  phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
V428_18665  sulfite reductase [NADPH] flavoprotein alpha-component [KO:K00380] [EC:1.8.1.2]
V428_18670  sulfite reductase subunit beta [KO:K00381] [EC:1.8.1.2]
V428_14170  sulfite reductase subunit A [KO:K16950]
V428_14175  sulfite reductase [KO:K16951]
V428_14180  sulfite reductase subunit C [KO:K00385]
V428_15160  cytochrome C biogenesis protein CcmH [KO:K17230]
V428_18225  tetrathionate reductase subunit A [KO:K08357]
V428_18235  tetrathionate reductase subunit B [KO:K08358]
V428_18230  polysulfide reductase [KO:K08359]
V428_00615  thiosulfate sulfurtransferase [KO:K02439] [EC:2.8.1.1]
V428_01055  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
V428_16940  cysteine synthase [KO:K01738] [EC:2.5.1.47]
V428_02665  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
V428_03165  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
V428_12475  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
ahr00260  Glycine, serine and threonine metabolism
ahr00270  Cysteine and methionine metabolism
ahr00680  Methane metabolism
ahr00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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