Astyanax mexicanus (Mexican tetra): 103029184 Help Entry 103029184         CDS       T05042                                  Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism amex  Astyanax mexicanus (Mexican tetra) Pathway amex04115   p53 signaling pathway amex04145   Phagocytosis amex04148   Efferocytosis amex04350   TGF-beta signaling pathway amex04510   Focal adhesion amex04512   ECM-receptor interaction amex04518   Integrin signaling amex04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:amex00001]  09130 Environmental Information Processing   09132 Signal transduction    04350 TGF-beta signaling pathway     103029184   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     103029184    04518 Integrin signaling     103029184  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     103029184    04148 Efferocytosis     103029184   09143 Cell growth and death    04115 p53 signaling pathway     103029184   09144 Cellular community - eukaryotes    04510 Focal adhesion     103029184   09142 Cell motility    04820 Cytoskeleton in muscle cells     103029184  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:amex04131]     103029184   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:amex00536]     103029184 Membrane trafficking [BR:amex04131]  Endocytosis   Phagocytosis    Opsonins     103029184 Glycosaminoglycan binding proteins [BR:amex00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    103029184 SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC VWC2L_2nd TSP1_ADAMTS TSP1_CFP_C EGF_3 cEGF EGF TSP1_CCN Motif Other DBs NCBI-GeneID:  103029184 NCBI-ProteinID:  XP_015462406 Ensembl:  ENSAMXG00000012179 LinkDB All DBs Position 14:46992907..47009135 Genome browser AA seq 1174 aa AA seqDB search MMFSALFLLLMLCCWTSEGSRMAENRDDNSVYDLFELARVNKKNHGVSLVKGPEPYSPAY KILNPNLIPSIPEHSFRDLVYSIQEEKGFLFTVNLKQAKKTRGSLLTVEKKDGSGPIFEI ISNGDANTLDLVFTTANKQDVVSIEDAHLASGSWKNITLFVQEDRAQLHIGCEEINTSEL DVPIHQILTQEVVDIANLRIGKGAVKDRFMGVLQNVRFVFRTTVDAIRRNMGCESSTYIT DVMTLDNPVNGSSPAIRTDYTGHKTKDLQDICGFSCEDLASMFKELKGLGVVVKQLSNEL LQVRTDNNLIKNKIKIHSGVCLHNGVVYKDKDEWTVDSCTHCTCQNSATICREISCPLMP CANATVPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCEGT SVQTRDCYLQECDKRFRQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCQG EGRQTEPCKMSPCPVNGGWGPWSLWDTCSVTCGGGLQTRHRLCNNPMPKHGGKECVGDAK GTRLCNSEDCPIDGCLSSPCFAGTKCTSFPDGSWKCGECPVGYTGDGMHCEDIDECKAVP EACFTLNGVHRCENTEPGYNCLPCPPRYSGVQPFGKGIEQAMANKQVCAPKNPCEDGSHD CNKNANCIYLGVFSDIMFRCECKPGYAGNGHICGEDSDLDGWPNTNLHCVENATYHCKKD NCPNLPNSGQEDYDKDGTGDACDSDDDNDGIPDDRDNCPFTFNPRQYDQDRDEVGDRCDN CPYDSNPDQIDTDNNGEGDACAIDIDGDGILNEKDNCPYVYNIDQRDTDYDGVGDHCDNC PLEHNPDQIDSDSDNVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDH DDDNDGVPDDKDNCRLAPNPDQIDSDGDGRGDACKDDFDQDNVPDIEDVCPENFAISETD FRKFQMVPLDPTGTSQIDPNWVVRHQGKELLQTVNCDPGIAVGFDEFNAVDFSGTFFINT DRDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHL RNALWHTGDTAGQVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGHIRVIMYEGKKVMADSG SVYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDI NT seq 3525 nt NT seq  +upstreamnt  +downstreamnt atgatgttcagcgcgctctttttactgctgatgctctgctgctggacttcagaaggaagc cggatggcagagaaccgagatgacaacagcgtgtacgatcttttcgagctggcacgtgtg aataagaagaaccacggagtgagtttggtgaaggggccggaaccctacagtcccgcgtac aaaatcctcaaccctaacctgatcccctccatcccagagcactccttcagggacctcgtc tactccattcaggaagaaaagggattcctcttcacagtcaacttgaagcaggccaagaaa acccgaggcagccttctgactgtggagaagaaggatggcagcgggcccattttcgagatt atctccaacggagatgccaacactctggatttggttttcaccacggctaacaagcaggac gtggtgtccatcgaggatgcccacttggcgagcggcagctggaagaacatcacgctgttt gtgcaggaggatcgtgcgcagttacacatcggctgcgaagagattaacaccagcgagctg gacgtgcctattcaccagattctgacgcaggaggtcgtcgatatcgctaacctcaggatc gggaagggagcagtgaaagataggtttatgggtgttctccagaatgtgcgctttgtattc agaaccacagtggacgcgatccgacgcaacatgggatgcgagagctccacctacatcaca gacgtcatgaccctggacaaccctgtgaacggctccagtccggccatccgcactgattac actggacacaagacaaaagatctccaagacatctgtggcttctcctgtgaggacctggcc agcatgtttaaggagctcaaggggctcggtgtggtggttaagcagctgtcaaacgagctc ctccaagtgaggacggataacaacttgataaagaacaagatcaaaatccacagcggcgtg tgtctgcacaacggcgtcgtctacaaagacaaggacgagtggacggtggacagctgcacc cactgcacctgccagaactctgccaccatttgccgggaaatctcctgcccgctcatgccg tgtgccaacgccaccgtgcccgacggtgaatgctgcccacgctgtggaacaccgagtgac tacgctgaggacggatggtccccctggtctgagtggacgcactgctcggtaacctgcggt cgtggcatccagcagcgcggacgctcctgcgaccgcatcaacagcaactgcgagggaacc tctgtgcaaaccagagactgctacctgcaggaatgcgacaagcgcttcaggcaagatggc ggctggagccactggtctccttggtcctcgtgctcagtgacgtgcggagagggcgtcatc acccgcattcgcctctgcaactcgcctacgccgcaaatgggaggcagggactgccaggga gagggtcgtcaaacggagccatgcaagatgtctccatgccctgtaaacggaggttggggg ccgtggtcactgtgggacacttgctccgtaacttgtggaggaggactgcagaccagacat cgcctctgtaacaatcccatgcctaaacatggtggaaaagagtgcgtgggtgatgctaaa ggcactcgcttgtgcaactccgaggactgtcccatcgatggctgtctctccagcccttgc tttgctggaaccaagtgcaccagctttcctgacggctcctggaagtgtggcgagtgtcct gttgggtatactggagatggcatgcactgtgaggacattgacgagtgcaaagctgttcct gaagcttgcttcactcttaacggagtccatcgctgtgagaacacagagcccggctataac tgccttccgtgtccccctcgctactccggagtccagccttttggaaaaggaattgaacag gcgatggccaacaaacaggtctgcgcaccaaagaacccttgcgaggatggcagccatgac tgcaacaaaaacgcaaactgtatttacctgggcgttttctccgacatcatgttccgctgc gagtgcaaacctggctacgcaggaaacggacacatctgcggtgaggactcggacttggat ggctggcccaacaccaatcttcactgcgtggagaatgccacctaccactgcaagaaggac aactgccccaaccttcccaactccgggcaagaggactacgacaaagacggaaccggagac gcttgtgatagcgatgatgacaacgatgggatccctgatgatagggacaactgcccgttc accttcaacccaagacagtatgatcaggaccgcgatgaagtcggcgaccgctgtgataac tgcccgtacgacagcaaccccgaccagatcgacaccgacaacaacggcgaaggcgatgct tgtgccattgacatcgatggcgatggtattctgaacgagaaagacaactgcccatacgtg tacaacattgaccagagagacacagactatgatggcgttggagaccactgtgataactgc ccgttggagcacaatcctgatcagatcgactcagattcagataatgtgggcgacaagtgc gacagcaatcaggacatcgacgaggacggccatcagaacaatctggacaactgcccgtac atccccaacgccaaccaggccgaccacgacaaggacggcaagggagacgcctgtgaccac gatgacgacaacgacggtgttcctgacgacaaagacaactgcagactggcccccaaccca gaccagattgactctgatggtgatgggcgtggcgatgcctgcaaagacgactttgaccaa gacaatgtgcccgatattgaagacgtctgtccggagaacttcgccatcagtgagacagac ttccgcaagttccagatggttcccctggaccccacaggaacttcacagattgaccccaac tgggtggtccggcatcagggcaaagagcttctgcagacagtcaactgcgaccctggcatt gctgttggttttgatgagtttaacgccgtggacttcagtggaaccttcttcatcaatacc gaccgtgatgacgattacgccggtttcgtcttcggctatcagtccagttcccgcttctac gtggtgatgtggaaacagatcacccagacatactggtcccacacacccaccagagctcag ggctattctggactgtccatcaaagtggtaaactccaccacaggacccggagagcacctc aggaacgcgctgtggcacactggagacacggcaggacaggttcgcactttgtggcacgac cccaagaacatcggctggaaggattacactgcctacagatggcacctgatccacagacct aaaactggacacatcagagtcatcatgtacgaaggcaagaaggttatggcagattctgga agcgtatacgacaagacgtatgctggtggaagacttggactctttgtcttctctcaagag atggtttacttctcagacctcaaatatgaatgcagagatatataa

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