Astyanax mexicanus (Mexican tetra): 103030456
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Entry
103030456 CDS
T05042
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103030456 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
amex03400
]
103030456 (lig4)
Enzymes [BR:
amex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103030456 (lig4)
DNA repair and recombination proteins [BR:
amex03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103030456 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
103030456
NCBI-ProteinID:
XP_007228763
UniProt:
A0A8B9JNU2
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All DBs
Position
21:21825943..21830780
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AA seq
917 aa
AA seq
DB search
MEGTSKNGSTSQTTKNDATSVAAQVPFLHLCTVLEKIQKAKGRPDKAKCLKEFMESWRKF
HAALHKDSPSTTDSFYPAMRLIVPPFERERMAYGIKENMLAKLYIEVLGLPKTGPEANKL
LNYRAPTTSQGEAGDFALTAYFVIKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDLVKK
SLLHLITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVTTDLDKVCRQLH
DPSVSLNEVSIGLFSAFKPMLAAVANIRQIEKQMKDQPFYIETKLDGERIQLHKDGDVYK
YYTRNSFEYTQQFGASPLDGSLTPYIHNVFKPHVVNCILDGEMMAYNPTAETFMQKGSKF
DIKRLMDDSDLQTCFCVFDVLLVNDQKFGNEPLKKRYDTLQTVFTPIKGRIQLVPKAEGR
NMQQVVNALNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGG
YWGKGRRSGMLSHFLCAVAESPSPGEKPTVFHTICRIGSGYTMKELYDLGLKLAKHWKVY
RKNDPPASILCGTEKPEVYIEPQNSVIIQVKAAEIVESDMYKTNCTLRFPRIERIREDKE
WHQCMTLDELSQFRTKASGKLASRHFQIDGDQPDKKKRKLAAKPKKTIGIINHYKAQDLS
AVTKETDMFEDVEFCVINGNDSHSKADLEKAVARCGGIVVQNPGKDTYCVIAGVENMRVK
NLISSDQHDVVWASWLLECLDGKQVLPWHPRHMIHMSPPTREHFAKEYDRYGDSYYINTD
EQQLRDIFKRIDQPTTEVDPTFAASVEAEFGWDDLPTSMFRPYCAYFDRCADINDPESVI
RGTCLDTRALEFRFYGGTVTEGIKEGISHVVVAEQERILVLRTLRRLFKKKFKIVRETWV
TDSIKAGHVLNNNEYLL
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacatctaaaaatggctctacgtctcaaaccaccaaaaacgacgctacatca
gttgctgcacaagtgccatttcttcacctctgcacagtccttgagaagatacaaaaagct
aaaggtagaccagacaaggctaaatgtttaaaagagttcatggaatcgtggagaaaattt
catgcagcacttcacaaggacagtcccagcacgacagactcattctacccggccatgcgc
ctcattgtgcctccatttgagagggaaagaatggcttatggcatcaaagaaaacatgcta
gccaaactctacattgaagttttggggctcccgaagactggcccagaagccaacaaactt
ctcaactacagagcccccacaacatcgcaaggggaagcaggagacttcgccctcacagcg
tattttgttatcaaaaagagatgcacgagccaaggcaacctaagcattaaagaggtcaac
gactttttggactctgtcgcaataaacaatgctagcaaacaaaaagatcttgtgaagaaa
agccttttgcatctgatcactcagagttcagcactggagcagaagtggctcattcgtatg
atccttaaagatatgaaacttggtgttagcaaggaaaccgtgctccaggttttccatcca
gatgctgccgaactctacaacgtcactacagacttggacaaagtgtgcagacagctacac
gatccctctgtttccttgaatgaggtgtccattggtctcttctctgccttcaagcccatg
cttgcagctgttgccaacatccggcaaatcgagaaacagatgaaggaccagcccttttat
atcgaaaccaagcttgatggtgagcgcatccaacttcacaaagatggagatgtgtacaag
tattacacccgcaactcttttgagtatacgcagcagtttggtgcctcaccactagacggc
tctcttacgccatacatccacaatgtctttaagcctcatgtggtcaactgcatcttggat
ggtgagatgatggcttataatcccaccgccgagaccttcatgcagaaaggcagcaagttt
gacattaagaggttgatggacgactcggatttacagacttgtttttgtgtgtttgacgtt
ctgcttgtcaacgaccagaagtttggaaatgagcctctgaaaaagcgctacgacactttg
caaacggtgttcacgcctatcaaaggccgaatccagctggtgcctaaagcggaaggcaga
aacatgcaacaagtagtcaacgccctcaacgaagccattgataaccgagaagaagggatc
atggttaaggatccaatgtccatctacaagccagacaaacgtggggaagggtggctgaag
atcaaacctgagtatgtggatggtctcatggacgaactggacctgctaatagtgggcggc
tactgggggaaaggaagacggagtgggatgttgtcccacttcctttgtgctgttgccgaa
tcccccagtcctggagagaagcccacggtgttccatacgatctgtcgaattggctcaggc
tacaccatgaaggagctgtacgaccttggccttaaactggccaagcactggaaagtctac
cgcaagaacgaccctccggcatcgattctttgtggaacagagaagcctgaggtttacatt
gagccacagaactctgtgatcatccaagtcaaggcggcggagattgtcgaaagtgatatg
tacaagacgaactgcacgttacgcttcccccggatcgaaaggatccgagaggacaaggaa
tggcatcagtgcatgaccttggacgagctcagtcagttccgcactaaggcttcgggcaaa
cttgcgtccagacacttccaaatcgacggagaccagccggacaagaagaagcggaaactt
gcggccaaacccaagaaaaccatcggcataatcaaccactacaaggctcaagacctctct
gcagttacaaaggagaccgacatgttcgaagacgttgagttctgtgtgatcaacggaaac
gacagccattccaaagcagatctcgagaaagccgtggctcgttgcggaggcatcgtggta
cagaaccccggaaaggacacatactgcgtcattgctggcgttgaaaacatgagggtgaag
aacctcatcagttcagaccaacatgatgtggtatgggcttcctggctgctggaatgcctg
gacgggaaacaggtgttgccttggcatccacgccacatgatccacatgtctccacccaca
cgggaacactttgcaaaagagtatgatcgttatggagacagttactacatcaacactgat
gagcagcagctgagggacatcttcaagaggattgaccaacctactaccgaggtggacccg
acttttgcagcctcagttgaggcagagtttggttgggacgacttgccaactagcatgttt
agaccctactgtgcctactttgaccgttgtgctgatataaatgacccagaaagcgtcatt
cggggtacttgtttagacactcgggcactggagttccgcttttacggaggaacggtaact
gaagggataaaagaaggtatctcgcatgtagtcgtggcagagcaggagagaatattagtc
ctgagaacactgaggcgtctgtttaagaagaagttcaagatcgtgagggagacgtgggtg
actgattcaatcaaagcaggacatgtactaaataacaacgagtacctcttgtaa
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