Astyanax mexicanus (Mexican tetra): 103031326
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Entry
103031326 CDS
T05042
Symbol
arhgef1b
Name
(RefSeq) rho guanine nucleotide exchange factor 1b isoform X1
KO
K12330
Rho guanine nucleotide exchange factor 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04270
Vascular smooth muscle contraction
amex04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
103031326 (arhgef1b)
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
103031326 (arhgef1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103031326 (arhgef1b)
Membrane trafficking [BR:
amex04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
103031326 (arhgef1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH_13
PDV_N
Motif
Other DBs
NCBI-GeneID:
103031326
NCBI-ProteinID:
XP_007232504
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All DBs
Position
1:complement(109126689..109200987)
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AA seq
1019 aa
AA seq
DB search
MDYEDAHNGRVLSGAHGNSARSIIGAEDEDFENDLDQTVDDQCSHFNSIELLKSRPTHLL
VFLHHVILQFDCAPVLCYLHADLFKSYSTRDTKKYFGEFCSTFLDKGAILRVTVPSHIAM
ELDRTRPELIGEDQQRRYAQEMQNMQCLEVLRQLDDFRQKRMMGMTPNEQELSQVENHYP
TDRVPREMKEKAVAEMLYEKLSDANPAIVADEDKFSAIFDAVAYYMKQLGVKAKAPDSKK
SRGFKIMRKKPGKKDESKPVRRLPGWFYGGNEPKPPIEGEKPPKPGVTSQVPVQVIEASE
VPPSNPVITTSPESTQTDNVMNTSQTSLPSLSDGGDVSPVCNTGPVWEPPTIELQTEDSH
DKDRRKTRSVRRSESLCVERRHSRRGGSARAKQSRSRSDVDLQSAATSHPPSPSPLTSVF
GDAPYMQPEGPLTGSVSSPLPQQEEVEPRLLELEQEPPSWRELASSEVLNKLSKKEIKRQ
EVINELFATEHAHVRMLSVLQTVFYRPLEREAIMSSDDLNAIFPGLDEIIDVHYAFYENL
KKVRQEDGFVVKAISTPLLNRFLGSEGDWFQKLTARFCSHQSWALDQIKSRQKKDPRFNA
FILDAESKPQCRRLQLKDIIPTEMQRLTKYPLLLENIAKSTEDNTEKQNVQQAADCCRKI
LNHVNDEVKHMENLLTLRDYQRRLDTSGLKPSNELFLEYKNFDLTTRRMLYEGPLIWRVT
KEKAIDVQGVLLGDMLVLLQKQDDKMLLKCQSKSIIAAEVGKQMLSPIIKLDSAFLREVA
TDRKAFYVIFTWDSGAQIYELVAQSVAERKTWNEMIKSAIDELKKNGGSTLERARPGSIP
KESSGIPYNPMMQAPLSPTENGADPLKNSADEKSRHSQPSVIDYLSANGFDPLGHSNAPP
ERSAPGALEEVMSLKRLLVRSISVSDELHPEKENDGSQLLVEEHSTEGQEAGVQDEKVKG
EDDGGISAPLVLSNESLEEVRRKLGSLEDKLKRLQNVEEEYHRLQEALAKFTIQRGSYN
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggactatgaagacgcccataatgggcgggtcctgtctggggcgcatggtaactcggcc
aggagtataattggagcagaggacgaggactttgagaatgatctggatcagacagtagat
gatcagtgcagtcattttaacagtattgaactgctgaagtccagacccacccatctgctg
gtctttctgcatcatgtcatcttacagtttgactgcgctcctgtgttatgctacctgcat
gcagacctgtttaagagctacagcaccagagacacaaagaagtactttggggaattctgc
tccactttcctggacaaaggagcaattctcagagtaactgtgccatctcatatcgcaatg
gaattagaccgtactcgtcctgaactgatcggcgaggaccagcagaggcgctacgctcag
gaaatgcagaatatgcagtgcctagaggtgctgagacagctggacgacttcaggcagaag
aggatgatgggaatgacccctaatgaacaggagctcagtcaggtggagaatcactaccct
actgaccgagtacccagggaaatgaaggagaaagcagtggctgagatgctgtacgagaag
ttatcagatgcaaaccccgcaatcgttgcagatgaggacaaattctctgccatctttgat
gcagtggcttactacatgaagcaactgggagtgaaagccaaagctccagacagcaagaag
tccagagggtttaagattatgagaaagaagcctggaaagaaagatgaaagcaagcctgtt
cggcgactccctgggtggttttatggcggcaatgagccaaagccaccaatcgaaggtgaa
aagcctcccaagccaggtgtgacaagccaagtacctgttcaagtgatagaggccagtgag
gtgccacccagcaacccagtcataactaccagccctgaatccactcagactgataatgtt
atgaacaccagccaaaccagtctcccgtctttgtcagatgggggtgatgtttctcctgtg
tgcaacacaggccccgtctgggagccacctaccattgaactccaaacagaggacagccat
gataaagacagacggaagacaaggagtgtgcgacgcagtgagagtctgtgtgtggaaagg
cgtcactctcggcgtggtggctccgcccgggccaaacagtctcgctcccgtagcgacgtg
gaccttcagtcagctgctacctcccaccccccctcaccctcccccctgacctctgtcttc
ggggatgcaccttacatgcagcctgagggccccctcacaggatctgtatccagtccctta
cctcagcaggaggaggtggagccccgcctcctggaactcgagcaggagccacctagctgg
agagagcttgcttccagtgaggttttgaacaaactcagcaagaaagagatcaagagacag
gaagtcatcaacgagttgttcgcaacagagcacgctcatgtgcgcatgctgagcgtcctc
cagacagtgttctatcgtccgctggagagggaggcgataatgtcttctgatgatctaaac
gccatattcccaggcctggatgagatcatagatgtgcactatgctttctatgagaacctg
aagaaggtgcgccaggaggatgggtttgtggtcaaagccatcagcactccactgctgaac
agatttcttggatctgagggtgactggttccagaagctcacggctcgtttctgtagccac
cagtcttgggctttggatcaaattaaaagcagacagaagaaagatcctcgcttcaatgcc
ttcattcttgatgcagagagtaagcctcagtgcaggagattacagctgaaagacatcatt
cctactgagatgcaaagactgacaaagtaccccctcctgctggagaatattgccaagagc
acagaggacaatacagagaaacagaacgtccagcaggctgctgactgctgtcgtaagatc
ctaaaccatgttaacgatgaggtgaaacatatggagaatttactgacattaagagattat
cagcgcagactggatacttcaggactgaagcccagcaatgagctcttcttagagtataag
aattttgatcttaccacaagaaggatgctctacgaggggccactgatctggagagtgact
aaggagaaagctatagacgtgcagggtgtgctgctgggagacatgctggttttgctgcag
aagcaggatgataagatgctattgaaatgtcagagtaaaagcatcatcgctgctgaagta
ggcaaacagatgctgagccccatcattaagcttgactcggcgttcctccgtgaagtggcc
acagatcgaaaagcgttctatgtgatcttcacctgggacagtggagcacagatctatgag
ctcgtggcccagtctgtggcagagaggaaaacgtggaacgaaatgataaagtcagcgatt
gatgagttaaagaagaatggcggctccaccttggagagagcgagaccaggcagcattccc
aaagaaagcagcgggataccttataaccctatgatgcaggctcctctcagccccactgag
aatggagcagacccactgaagaatagcgctgatgagaagagtcggcactctcagccctca
gtgattgactacctttctgcaaacggatttgatcctctcggacacagcaacgcccctcca
gagaggtcagctcctggagctctggaggaagtgatgtctttgaagaggctactggtcaga
agcatcagtgtatctgatgagctccacccagagaaggaaaatgatggaagtcagttatta
gttgaggagcacagcacagagggccaggaggcaggagtgcaggatgaaaaggtgaaagga
gaggacgatggagggatttctgctcctctagtgctctcaaacgagagtttggaggaggtc
cggaggaaactgggtagtctggaagacaaactaaagagactacagaatgtggaggaggag
tatcacagactgcaagaagcgctggctaaattcaccattcaaagaggcagctacaactga
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