Astyanax mexicanus (Mexican tetra): 103031445
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Entry
103031445 CDS
T05042
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04115
p53 signaling pathway
amex04145
Phagosome
amex04148
Efferocytosis
amex04350
TGF-beta signaling pathway
amex04510
Focal adhesion
amex04512
ECM-receptor interaction
amex04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
103031445 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
103031445 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
103031445 (thbs1b)
04148 Efferocytosis
103031445 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
103031445 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
103031445 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
103031445 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
amex04131
]
103031445 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
amex00536
]
103031445 (thbs1b)
Membrane trafficking [BR:
amex04131
]
Endocytosis
Phagocytosis
Opsonins
103031445 (thbs1b)
Glycosaminoglycan binding proteins [BR:
amex00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
103031445 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
cEGF
Laminin_G_3
Laminin_G_2
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
103031445
NCBI-ProteinID:
XP_007258230
Ensembl:
ENSAMXG00000005939
UniProt:
A0A8B9KHG1
W5KF63
LinkDB
All DBs
Position
1:76511575..76522893
Genome browser
AA seq
1178 aa
AA seq
DB search
MINKARNMKLTGIFLLVMLWSCEGAREAESRDDNSVYDLFELVQVPRKNHGVTMVKGDDP
YSPAYKILDPDLIPPVPESAFRDLMDSIQAERGFLLLVNFKQFRRTRGALLTVEKLDGSG
PVFEIISNGKANTLDLVFSTESKQQVVSIEDADLATGHWKNITLFVQDDRVHFYVGCEDV
SIAELDAPIQTILTPETPGVANLRIGKGAVNDKFMGVLQNVRFVFGTTLDAILRNKGCQN
SFMTDTITLDNPINGSSPAIRTDYTGHKTKDLQMICGFSCEDLLSMFKELKSLGVVVQEL
SNELRKVTDENNLLMKRMGIHAGVCLHNGIVHKNKEEWTVDDCTECTCQNSATVCRKISC
PLIPCANATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNN
CEGTSVQTRDCYLQECDKRFKQDGNWSHWSPWSSCSVTCGSGVITRIRLCNSPTPQMGGK
DCQGQGRQTEKCEKSPCPINGGWGPWSPWDKCSLTCGGGTQSRKRLCNDPAPKYGGKDCV
GDATATQICNKQACPIDGCLSNPCFAGAQCTSFKDGSWKCGKCPTGYTGNGINCKDINEC
KEVPDACFEFNGVHRCENTVPGYNCLPCPPRYSGPQPFGRGVEDAVAKKQVCTPRNPCLD
GSHDCNKNARCNYLGHFSDPMFRCECRPGYAGNGHICGEDTDLDGWPNADLVCVENATYH
CKKDNCPNLPNSGQEDYDKDGIGDACDDDDDDDGIPDDRDNCPFIFNPRQYDYDRDEVGD
RCDNCPYNSNPDQTDTDNNGEGDACAVDIDGDGILNERDNCPYLYNVDQKDTDLDGVGDQ
CDNCPLEHNPDQLDTDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGD
ACDFDDDNDGIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDI
SETDFRKFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTF
FINTERDDDYAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGP
GEHLRNALWHTGDTAGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIM
ADSGRIYDKTYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgattaataaagcacggaacatgaagttaacaggaatatttttgttagtgatgctgtgg
agctgcgagggcgccagagaggcagagagcagggatgataacagcgtctacgacctgttc
gagctggtgcaggtgcccaggaagaaccacggggtgaccatggtgaagggggacgacccc
tacagccctgcgtacaaaatcctggaccccgacctgatccccccggtgcccgagagcgcc
ttcagggacctcatggactccatccaggcggagaggggcttcctgctgctggtgaacttc
aagcagttcaggcgcaccaggggcgctctgctgaccgtagagaagctggacggctccggg
cccgtcttcgagataatctccaacggcaaggccaacaccctggacctggtcttctccacc
gagagcaagcagcaggtggtgtccatcgaggacgcggacctcgccacgggccactggaag
aacatcacgctcttcgtgcaggacgaccgcgtgcacttctacgtgggatgcgaggatgtc
agcatcgccgagctggacgcgcccatccagaccatcctgacccccgagacccccggggtg
gccaacctgaggatcggcaagggggcagtcaacgacaagttcatgggtgttctccaaaat
gtgcggtttgtttttgggaccacactagacgcaatattgaggaataaagggtgtcaaaac
tcattcatgacagatacaatcaccctggacaatcccatcaatggatccagtccagccatc
aggacagactacactggccacaagacaaaagatctacagatgatttgtggcttttcctgt
gaggaccttcttagcatgttcaaggaactgaagagccttggtgtggtggtgcaagagctg
tccaatgagcttcgcaaagtgacagatgaaaacaatctgctcatgaaacgaatgggaatc
catgccggtgtctgtcttcacaatggcattgtgcataagaacaaggaagaatggacagtg
gacgactgcactgagtgcacttgccaaaactctgcgacagtgtgccgtaagatttcctgt
cctctgattccctgtgccaatgcaactgtgccagacggggaatgctgcccccggtgtgga
actcccagcgactctgccgaggacggctggtccccctggtctgaatggacccattgttct
gtgtcttgtggaaggggcattcagcagcgtggccgctcctgcgaccgcatcaataacaac
tgcgagggcacctccgtgcagaccagagactgctacctccaggagtgtgacaagcgcttt
aagcaagatggcaactggagccactggtcaccatggtcctcctgctcagtcacctgtggg
tctggcgtcatcacgcgcatccgtctctgcaactcccctacgccacagatgggaggaaaa
gactgccagggccagggcaggcagactgagaaatgtgagaagtccccatgtccaatcaac
ggtggttggggaccctggtcaccatgggataagtgctcactcacctgcggaggaggcacc
cagagccgcaaacgtctttgcaacgatcctgcacccaagtacggaggcaaagactgtgtt
ggtgatgctactgcaactcaaatctgcaacaaacaggcctgtcctattgatggatgtctg
tccaatccctgcttcgctggggcccagtgcacaagcttcaaagatggttcatggaagtgt
gggaaatgtccaacaggttacacaggcaatggcatcaactgcaaagacattaatgagtgc
aaagaagtccccgatgcttgctttgaattcaatggagtccacagatgtgaaaatacagta
cctggatacaactgccttccatgccctcctcgttacagtggtccccagccatttggccgc
ggagtggaggatgctgttgcaaagaaacaggtgtgcacacctcgtaacccctgccttgat
ggaagtcacgactgcaataagaatgcccgctgcaactacttgggacatttctcagacccc
atgttccgctgtgagtgcaggccaggctatgctggcaatggacacatctgtggagaggac
actgatctggacggctggcctaatgctgaccttgtgtgcgtggaaaacgccacctatcac
tgcaagaaggacaactgcccgaaccttccaaactcaggtcaggaggactacgacaaggat
ggaattggtgatgcttgtgatgacgatgatgacgatgatggtattcctgatgacagggac
aactgcccattcatcttcaaccccaggcagtatgactacgaccgcgatgaggttggagac
cgttgcgacaattgtccgtataacagcaatcctgaccagacagacacagacaacaatggt
gaaggagatgcatgtgctgtggacattgatggagatggtattctgaacgagagggacaac
tgtccctatctgtacaacgtggatcaaaaagatactgatcttgacggggtcggtgaccag
tgcgataattgccctctggagcacaatcctgaccagcttgacacggactctgatcgggtg
ggagataagtgcgacagcaaccaggacattgatgaagacgggcatcagaacaacttggac
aactgcccttacattcccaatgccaaccaggctgatcacgacaaggatggcaaaggagat
gcgtgcgattttgatgatgacaatgatggcatcccagacgataaagacaactgcaggctg
gccttcaacccagatcagctggactctgatggtgatggacgtggagatgcctgtaaggac
gactttgaccaagataatgttcctgacatctatgatgtgtgccctgaaaactttgacatc
agcgagactgacttccgcaagttccagatggtgcctctggaccccaagggcacttctcag
attgatcccaactgggtggtgcgtcaccagggcaaagagttggttcagacagtcaactgc
gatcctggaattgccgttggttttgatgagttcaacgcagtggacttcagtgggaccttc
ttcatcaacacagagagagatgatgactatgctgggttcgtgtttggctaccagtctagc
tctcgcttctatgtggtgatgtggaagcaaattactcagacgtattggtccagcaaaccc
accaaggctcagggctactcagggctgtcaattaaagtagtcaactcaaccactggacct
ggtgaacatctaaggaatgctctgtggcacactggggacactgcaggacaggtgcgcact
ctctggcatgaccccaagaatgtcggttggaaggacttcactgcttacagatggcaccta
acacacaggccaagaacaggacacataagagttgtcatgtatgaaggaaagaagatcatg
gcagattctggaagaatctacgacaaaacctatgcaggtggacgactaggtctctttgtg
ttctcacaagagatggtatacttctcagacctcaaatatgaatgcagagatgtataa
DBGET
integrated database retrieval system
