Astyanax mexicanus (Mexican tetra): 103036427
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Entry
103036427 CDS
T05042
Symbol
sharpin
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K20894
shank-associated RH domain-interacting protein
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04217
Necroptosis
amex04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
103036427 (sharpin)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
103036427 (sharpin)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
amex04121
]
103036427 (sharpin)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
LUBAC complex
103036427 (sharpin)
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GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
ubiquitin
PH
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
103036427
NCBI-ProteinID:
XP_022533873
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Position
8:9880602..9895158
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AA seq
399 aa
AA seq
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MAGGLTVLMSVRVRAVLSSGAAAGSESLRLQLSMNPERPGDFHLSLRDTPSSGHIRSLAE
FELCTVRYEIKSPRCHELCVIKPPHETYSFTFRSEQEAQEWATVMLSSLREAHRVANVSS
HPTDDEVHYLKPVEKNTVLSLSDKEELCAELARAIEAGDTQAAVQHATALAHHQMTLTIQ
PAVNNFEDGEISLAVAVEDATSSCCVTVKVVPHMTVASLKQQMFAEYGFHPRVQRWVIGQ
CLCSDQRSLASYGVCRDGDTAFLYLLSARHARLSRQQCQQDQESALLTPAPKPAPNPTPT
AAAGSGPASHDWRGYSTLPPRLHHSSTGSSSSAAEKHSISDLMNLEMLQLRGPSNTQPGW
SCPSCTFINKSTRPGCEICSTERPAAPELSSSQQASLHL
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcggactgacggtgctgatgtcggtgcgggtgcgggcggtgctgagctccgga
gcggctgcgggatccgagagcctccgcctgcagctcagcatgaacccggagcggcccgga
gacttccacctgtccctcagagacacccccagctccggacacatccggtctctagcggag
tttgagctgtgcacagtgcggtatgagatcaagtcgcctcgctgtcacgagctgtgtgtc
atcaaacctcctcacgaaacctacagcttcaccttccgcagtgagcaggaggctcaggag
tgggccaccgtcatgctgtcatcactgagggaagctcaccgagtcgccaacgtttcctct
catcccactgatgatgaagtgcactatctgaagcctgtggagaaaaatacagtcttgtca
ttgtcggataaagaggagctgtgtgctgagctggctagagctatagaagctggagacacc
caggccgcagtgcagcacgctacagcgctcgcacaccaccagatgaccctgactattcag
cccgctgtgaataactttgaagacggggagatcagtctggcagttgcggttgaagatgcg
acgtcgtcttgttgtgtcacagtgaaagtcgttccccacatgactgtagcttctctcaaa
cagcagatgtttgcagaatacggcttccacccccgggtgcagcgctgggtcatagggcag
tgtttgtgctctgatcagcgctcgctggcgtcgtacggcgtgtgccgggatggtgacacg
gccttcctctacctcctctcagcacgacacgcccgcctcagccgacagcagtgccagcag
gaccaggagagcgccctcctcacgcccgcccccaaaccagcgccaaacccaacccccact
gcagcggcgggcagcggccccgccagccatgactggaggggctacagcacgctgccaccc
aggctgcaccactccagtacaggcagcagtagcagtgcagcagagaaacacagcatcagt
gacctcatgaacctggagatgctgcagctgagaggccccagcaatacacagccgggttgg
tcgtgcccttcctgcacgttcataaacaagtcgacgaggccgggctgtgagatctgcagt
acggagagacctgcggccccggagctcagcagctctcagcaggcctcgctgcatctatag
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