Astyanax mexicanus (Mexican tetra): 103039345
Help
Entry
103039345 CDS
T05042
Symbol
kdm2ab
Name
(RefSeq) lysine-specific demethylase 2A isoform X2
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
103039345 (kdm2ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
amex03000
]
103039345 (kdm2ab)
04121 Ubiquitin system [BR:
amex04121
]
103039345 (kdm2ab)
03036 Chromosome and associated proteins [BR:
amex03036
]
103039345 (kdm2ab)
Enzymes [BR:
amex01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
103039345 (kdm2ab)
Transcription factors [BR:
amex03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
103039345 (kdm2ab)
Ubiquitin system [BR:
amex04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103039345 (kdm2ab)
Chromosome and associated proteins [BR:
amex03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
103039345 (kdm2ab)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
103039345 (kdm2ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
Cupin_8
F-box
PHD
LRR_At1g61320_AtMIF1
LRR_At5g56370
LRR_Zer-1
LRR_4
Motif
Other DBs
NCBI-GeneID:
103039345
NCBI-ProteinID:
XP_022539209
Ensembl:
ENSAMXG00000015501
LinkDB
All DBs
Position
10:complement(22896524..22912829)
Genome browser
AA seq
1283 aa
AA seq
DB search
MDDSQPRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDEKLQSSYFNSDLVKIMDGKDF
TFEYIQQEGLRTPIIFTKTDGLGIQMPDEDFSVSDVNLFVGSRRMIDVMDVNTQKGIEMS
MSQWRRYYETPPSEREKLYNVISLEFSHTKLEHLVKRPASVDVIDWVDNMWPRHLKEKQR
DSTNAIIDMQYPKVQKYCLMSVKGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDKATDCQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYNIEDRTRVPSKFRYPFYYEMCWYVLERYLYSLTNTSHLTPEFQKHSLGIG
LKKEDYSKQNELNGHTGDGEEESEGEEDEEEEEEGEGEGEGEDVMDIKEEDNQEEKAPSP
PARPDVKVHLTPFELEGLWQLLHKLEELPAHKKCVPVGIRNAPALLNDIRAVLKEHANDD
PKLSYTGKPIVTWPKRPSWYKPPIRPLSPVNRQRAPSSGPTLAPVPRPVKPPSSISALRR
RRVRCKRCVACLRTECGACTYCKDMRKFGGPGRLKKTCILRQCLAPGLPLSAVCSICKEG
IQEIEGDTEPTQTLMECSECAQITHPECIMVPGEGVINKDLPSCWECPKCVQEKNTESSS
SSSEKECEGSVTTGSPSSGPPAKRAYREGIGVGSLRFGRKGHSPLSPSFFPLTRSRRQPP
PSQRLLLQHQQSRKRASIQELQHRRRIRLERKKILQSLLRQRTLERSAAVRAALSKGTSR
GRSVPAYRGRGVRFRGGGRVGALRGRMEKEERGTDSDEEEGRAKDERRENGRAGKENWPQ
RHSRGANVEENGDGQQNGERDRNDDEEHSRSDSSTALSDEVRGQRSCVTVTLQPSRGRRD
PSTIVPKLEANVSARSLPQSPRDLHGKSLLRPPLRNGARHSKKTHTNLHTHIAKSHTERT
HVQSPMLTRTTSKHSHMGQNHYSGRNSRLDRIKPLKSTSSSSTVACGSSEQNGVSEPGCE
RLVWVSVFRYLTQAELCVCMSVSKNWYKWGCDKRLWTRVNLSCCQSISPQALSGIIKRQP
VTLDLSWTTISKQQLSWLINRLAGLKDLVLSGCSWTTVSALSSLRCPLLRSLDLRWADGI
KEPQIRELLSPPGCNNRSQLRNMQCLRLCGLDVTEATLRLIIRHMPQLTRLELSHCPLTD
NALNLLTAVGSSTRNTLTHLNLAGCSRLTDHCLPYLQRLSCLSVLDLHDCKGVSRQACEK
FISELSVTALYCLSDDKLIQRIS
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggatgactctcagccccgctacagcaagcgcctgcgaacaggaacgcggcggcgctac
caggatgatggcatctcagatgatgaaattgaggggaaaagaatgtttgaccttgatgaa
aaacttcaaagcagctactttaattcagacttggtcaaaatcatggatggaaaagacttc
acttttgagtacatccagcaggaagggcttcgaaccccaatcatctttactaaaacagat
ggtcttggcattcagatgcctgatgaagatttcagcgtgagtgatgtgaatctgtttgta
ggcagtcgaaggatgattgatgtgatggatgtaaacactcagaaaggcattgagatgtca
atgagtcagtggagacggtactatgaaactccaccttcagaaagggagaagctgtacaat
gtcattagtcttgagtttagtcatacaaaactggagcacctcgtcaagagaccggcttcg
gtggatgtgattgactgggtggacaacatgtggcctcggcacctgaaagagaaacagaga
gactccactaatgccattatagacatgcagtacccaaaagtacagaagtattgtctgatg
agtgtgaagggctgcttcacagacttccacatagactttggcggcacatcagtctggtac
catatcctaaggggaggcaaggtgttctggctgatcccacccacgccacagaacctggag
ctctatgagaactgggtgttgtcagggaaacagggtgacattttccttggagacaaagcc
acagactgccagcgcattgagctaaaacagggctacaccttcatgatcccgtcaggttgg
atccatgcagtatacactcccgaggatacactggtgtttggtgggaatttccttcacagt
ttcaacattccaatgcaactaaacatatacaacattgaggaccgcacacgggttccatct
aagttccgttaccctttctattacgagatgtgttggtacgtgttggagcgttacctctac
tctttaacaaacacctctcatctaacaccggagttccagaaacactctctgggtataggt
ctgaagaaggaagactacagcaaacaaaacgaactcaatggtcatacaggggacggggag
gaggagtctgagggggaagaggatgaggaggaggaggaggagggcgagggtgagggtgag
ggtgaagatgttatggacattaaggaggaagataaccaagaagagaaggctccctcccct
ccggcccgtccagacgtgaaagtgcacctgacaccgtttgagctggagggcctatggcag
ctactgcacaaattggaggaactgcccgctcacaagaagtgtgtccccgtgggcatcaga
aatgctcctgcgcttctcaatgacattcgggctgtgctgaaggagcatgccaatgatgat
ccaaaattgtcttacactggaaaaccaatagtcacgtggccaaaacggccctcgtggtac
aagcctcctattcgtcccctgtctccagttaatcgtcagcgggctccgagctcaggtccc
acgctggcaccggtaccacgtcctgtaaaacccccctcttccatctcagctttgcgtcga
aggcgagtgcggtgcaaacgctgtgtggcttgcctacgcactgagtgtggagcctgcact
tactgcaaggacatgaggaagttcggtggtccaggcagactgaagaagacctgtattctc
agacagtgtctggcaccgggtctgcctctatctgctgtgtgttccatatgtaaggaaggg
atccaggagattgaaggagacacagaacccacacaaactctcatggagtgttcagaatgt
gctcagattacacatcctgaatgcataatggtgccaggagagggtgtgatcaataaggac
ctgcccagttgctgggaatgtcctaaatgtgtccaggaaaagaacacagagtcttccagc
agtagttctgagaaggagtgtgaaggcagcgtgacgactggttccccatcttcagggcct
ccagctaagcgggcatacagagagggtattggtgtggggtcgctacgttttgggcgtaag
ggtcattctcccctgtcgccctccttcttccctctgacccgctccagacgccaaccccca
ccctcccagaggcttctactgcagcaccagcaaagccggaagagagccagcatacaggaa
ttacagcacaggaggaggataaggttagaacggaaaaaaattcttcagtcgctcctgcgt
cagcggactttggagaggagtgcagcagtccgggcagccctcagcaagggcacatcccgt
gggagatcggtgccggcctacagggggagaggggtgcggttccgtggcggaggtcgagtt
ggagctctgagaggacggatggagaaagaggaacgtgggacagacagcgatgaggaggaa
ggtcgagcaaaggatgaaaggagagaaaacggacgggctggtaaagagaattggccacag
aggcacagcagaggggcaaatgtggaggagaatggagacggacagcagaatggagagcga
gataggaacgacgatgaagagcactcccgatcagactcttccacagcgctcagtgacgag
gtccgaggtcagaggtcttgcgtgactgtaaccttgcagccttctaggggtaggagggac
cccagcaccattgtgcccaaactggaggccaacgtatctgccagaagcctcccgcagagt
cccagggacctccatggcaagtcgttacttcgcccaccactccgaaatggagcccgccac
tcaaaaaaaactcacacaaaccttcacacacacatagcaaagtcacacactgaaagaact
cacgtccagtcccccatgttaaccagaaccacttccaaacattcccacatgggccagaac
cactacagcgggaggaattcacggctggacagaataaagcctttaaaatccacttcttca
tccagcacagtcgcttgtggatcgtctgagcagaatggagtgagcgagcctggatgtgag
agactggtgtgggtgtctgtcttccgctacctgactcaagccgagctgtgtgtctgcatg
tctgtctccaagaactggtacaaatgggggtgtgataagcgcttgtggacgcgggtcaat
ttaagctgctgccaatccatcagtccacaggccctctctggcatcatcaaacgccagccg
gtcacactggacctttcttggaccaccatatccaagcaacagctcagctggctcatcaac
cggctggctgggctaaaagatctggttttatcagggtgcagctggacaacagtctcagct
ctaagttctcttagatgtccattattgcgctcgttagatctgcgttgggcagacggcatc
aaggaaccacagatccgagaactcctcagcccaccaggttgcaataaccgatcccagctg
cggaacatgcagtgtttgaggctgtgtggtttggatgtgacagaggcgactctgaggctg
ataatcagacacatgccccagctaacgaggctggagctctcacactgccctctgactgac
aatgctctcaacctcctaaccgctgtgggctcctccacacgcaacactctcacacacctc
aacctagcaggctgcagtcgtctgactgaccactgtctgccatacctgcagcgtctgtcc
tgtctctcagtgctggacctgcacgattgcaagggagtctcccggcaggcctgcgagaaa
ttcatctccgaactgtcagtcactgctctttactgcctgtcagatgacaaactcatccag
aggatatcttag
DBGET
integrated database retrieval system
