Astyanax mexicanus (Mexican tetra): 103042330
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Entry
103042330 CDS
T05042
Symbol
pkp1b
Name
(RefSeq) plakophilin-1
KO
K10387
plakophilin 1
Organism
amex
Astyanax mexicanus (Mexican tetra)
Pathway
amex04382
Cornified envelope formation
amex04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
103042330 (pkp1b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
103042330 (pkp1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
amex04812
]
103042330 (pkp1b)
Cytoskeleton proteins [BR:
amex04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
103042330 (pkp1b)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT
ZER1-like_2nd
SIL1_FES1_HPBP1_C
HSF2BP_C
Atx10homo_assoc
TOR1L1_N
ELMO_ARM
ARM_UBP24_USP9X-Y
Motif
Other DBs
NCBI-GeneID:
103042330
NCBI-ProteinID:
XP_022531291
Ensembl:
ENSAMXG00000038111
LinkDB
All DBs
Position
5:5748738..5791057
Genome browser
AA seq
796 aa
AA seq
DB search
MRNDSVYSSMTLEPLRSALSIGEVGETSLALPSDRSARSAQQRVLEQVSTMKRSKSKYSS
GGGAGGGKAGGTGNLSPTSPQSDSVFYEYKLTPSALNGFINENSMSNGHAKAAKQGQSFV
QRTISTRTSSSQKNLSNSMFPSSPTAMSHSRGGQEGFTAFRSLEMSSPPAVSGGNARWSQ
TFRQTNRQTLERKHSQGALNSNSQIIGNGFGNGIGSVQMTGNGFGSGQVIGSSQMVGNGQ
VVGNGQMFGNGQVIGNGTIHRNSSGSNHQITTSQIISRRPPSTHSNPEGVKASVASRSKS
EIGVNGEARSTDLTVSEAVDCLLSQDENYQLCGASFIQHTTYTDDKAKQEVLKMKGINPL
VSLMNSPNPQIQMTAASALRNLVFKDPANKEEVQRCGGIGQAVQLLKNTESPETQKHVTG
LLWNLSSADNLKPELLRSALPVLTDTVLEPFAAADHSASADQEETFYNATGCLRNLSSGK
LGSRQAMRNCKGLVDSLVSYVQNSVDSGNPDDKSVENCVCILHNLTYQLESESPAIFSKM
NALAGYTNRRANTTDTGPIGCFSSQSRKIQQENHFDYPVMEDNNPKGQSWLIHSQALQSY
LSLLGSSQREATQEACCGALHNLTANKGIVSDVLSQTIVQKLNGLQYISPLLQSSNPELK
NSVTSLLGNLSRTPRLQSMMARQALPQLVRTLNSQGADLSPESDSSIATACHTVNKLLRA
EPEMSKQLLSNTLINSLNDISQNIALPKASKASGVLLHSLWSDKNIQSFLKKQGMNKKSF
VNDITSAAIKSVQVIE
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacgactcggtgtactccagcatgacgctcgagcccctgcggtccgcgctctct
atcggggaggtcggggaaacgtcgctcgcgctgccgtcagaccgcagcgcgcgctcggcc
cagcagcgcgtgctggagcaggtctccaccatgaagcgcagcaagagcaaatacagcagc
ggcggaggagcaggaggaggaaaagcaggaggaaccgggaacctctcccccaccagtcct
cagagtgacagcgtgttttacgagtacaagctcacacccagcgccctcaacggcttcatc
aacgaaaacagcatgagcaacggacacgctaaagcggctaaacaaggtcagagcttcgta
cagaggaccatcagcaccagaacttcaagttctcagaagaacctgagcaactccatgttt
cccagcagccccacagctatgagtcattcccgaggaggacaggaaggcttcacagctttc
cgcagcctggaaatgagctcccctcctgctgtcagtggtggaaatgcccggtggagccag
accttcagacagacaaacagacaaacattggagaggaagcacagccagggcgcccttaac
agcaatagtcagatcattgggaatggttttgggaatggcattgggagtgttcagatgact
gggaatggctttgggagtggtcaggtcattggaagtagtcagatggttgggaatggtcag
gtcgttgggaacggtcagatgtttgggaacggtcaggtcattgggaatggcaccattcat
agaaacagcagtggtagtaaccaccagatcaccaccagccagatcatcagcagacggcca
ccgtccacacactccaacccagaaggagtgaaggcgtcagtcgctagcagaagcaagagt
gagattggggtaaatggcgaggcacgctcgactgatctcacagtatcagaagcagtggac
tgtctcctcagccaggacgagaattatcagctgtgtggagcttccttcattcagcacacc
acctatactgacgacaaagccaagcaagaggtgctgaagatgaagggaatcaatccattg
gtgtcgctgatgaacagccccaaccctcagatccagatgacggcagcgtccgccctgcgc
aacctggtgttcaaagacccggccaataaggaggaggttcagcgctgcggaggaatcggc
caggccgtgcagctgctgaaaaacacagaatcacccgagactcagaaacacgttacaggt
ctcctgtggaacctgtcctcagcggacaacctgaaaccggagcttctccgcagcgctctg
cccgttctcaccgacaccgtgctggagccgtttgccgccgcagaccacagtgccagcgcc
gatcaggaggagaccttctataatgccacagggtgcttacgaaatctgagctcaggtaaa
ctgggcagcaggcaggccatgcgcaactgcaagggcctggtggactcgctggtgagctac
gtccagaacagcgtggactcaggcaaccctgatgataagtctgtggagaactgtgtgtgt
attctgcacaacctcacctaccagctggagagtgagtcacccgccatcttcagcaagatg
aacgccctggccggttacaccaaccgccgcgccaacaccacagacaccggccctatcggc
tgcttcagcagccagagccgcaagatccagcaggagaaccactttgattatccagtgatg
gaggacaacaatcctaaaggtcagagctggctgatccactcgcaggccctgcagtcgtac
ctgtctctgctcggatcatcccagagagaggccactcaggaagcctgctgtggagctctg
cacaacctcactgccaacaagggcatcgtgtcggatgtgttgagtcagacgatcgttcag
aagctgaacggtctccagtacatctcccccctgcttcagtcctccaaccccgagctgaag
aacagcgtcacatcactgctaggaaacctctccaggacccctcgcctgcagagcatgatg
gctcgtcaggctcttccacagctggttcgaaccctgaactcacagggggctgacctttca
cccgaatccgacagctccatagcaaccgcctgccacactgtaaacaagctcctgagggcg
gagccggagatgtccaagcagttgctaagcaacaccctgatcaactcgttgaatgacatt
agtcaaaacatagccttgcccaaagccagcaaagcatctggagttctcctccacagtctc
tggtccgataagaacatccagagcttcctcaaaaagcaaggaatgaataagaaatcattt
gtgaatgacatcacttcagctgcaatcaagtctgttcaggttattgaatga
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integrated database retrieval system