Astyanax mexicanus (Mexican tetra): 103044006
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Entry
103044006 CDS
T05042
Symbol
trpc5a
Name
(RefSeq) short transient receptor potential channel 5a
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
amex01009
]
103044006 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
amex04040
]
103044006 (trpc5a)
Protein phosphatases and associated proteins [BR:
amex01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103044006 (trpc5a)
Ion channels [BR:
amex04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
103044006 (trpc5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
Ank_5
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
103044006
NCBI-ProteinID:
XP_022530466
Ensembl:
ENSAMXG00000033341
LinkDB
All DBs
Position
21:complement(2856968..2926092)
Genome browser
AA seq
1029 aa
AA seq
DB search
MNPMSHLYYKKSSYSPYRDRIPLHIVRAEVELSQEERAFLLAVEKGDYAGVKHALQEAEV
YYNIDVNCVDPLGRSALLIAIENENLEVMELLLDHGVNTGDALLYAIRKEVVGAVELLLS
HRRPSGEKQVPSLMMDAQFSEFTPDITPIMLAAHTNNYEIIKLLVQHKVTIPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSQQCKRFAKDLLDQARSSRELETILNHRDDQSEELDPRECRDLAKLKLAIKYH
QKEFVSQPNCQQLLATLWYDGFPGWRRRHWAVKLVMCIIIGLLFPVFSIIYLLAPRSSLG
FFIKKPFIKFICHTASYLTFLFLLLLASQHIARTNLHMQGPPPTVVEWMILPWVLGFIWA
EIKEMWDGGFTEYVHDWWNLMDFAMNSLYLATISLKMVAYVKYNSSRPREEWEMWHPTLM
AEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQ
LYFYYETQAADEPNHCKGIRCEKQNNAFSTLFETLQSLFWSIFGLLNLYVTNVKARHEFT
EFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTL
PPPFNIVPSPKSAWYLCCWLHRWLCWRGDAPHSEKHENLKDLTEKHADRIIQNKHYQEVI
RSLVKRYVAAMIRSAKTNEGLTEENFKELKQDISSFRYEVMDLLGNRKPPRRTYSSSSEA
TLRDEGSDDGHSDGSKAKIKTAPGAGSPYGVSALFHSLSGMEFPTSTTAISTSHREDRPK
INGLRKNPSPCSSTSSVTAAGPALSRTWSRFTRFSGSKKTSFRRLGLLFSRMGSHLPQPA
GVTSATYTISDGLLQPPGAWRDLGISRGDGPVTRSETSLNHADTPAADSVSVPTSTNRQR
TNGRDILLTLGPLAPPPSLHCASSFSASSSRLLDSSEDVFQGLVGPYDGHVPDASDRGAE
HDDSVTTQL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccatgtcccatctctactataagaagtccagctactctccgtatcgggaccgg
atccctctgcacatcgtgcgggcggaggtggagctctctcaggaagagcgagcgttcctg
ctggccgtggagaagggagactacgccggggtcaagcatgcgctgcaggaagcggaggtc
tactacaacattgatgtgaactgtgtggatccgctgggtcgcagtgctctgctgattgca
atagagaatgagaacctggaggtgatggagctgctgctggaccacggagtcaacactgga
gatgctctgctctacgccatacggaaggaggtggtgggagcggtggagttactgttatct
cacagacggccgagtggagaaaaacaggtaccctctctaatgatggacgcccagttttca
gagtttacgcctgatatcactcccatcatgctagctgcccatactaacaactatgagatc
attaagctgctggtccagcacaaagtgaccattcccagaccgcatcagatccgctgtgac
tgtgttgagtgtgtctccagctctgaggtggacagtctgcgtcattcccgctcccgtctc
aacatctacaaagccctggccagtccttcactgatcgccctgtccagcgaggaccccatc
ctcaccgcgtttagactgggctgggagctgaaggagctcagcaaggtggagaacgagttc
cggcaggagtacgaggagctctcgcagcagtgcaaacgctttgccaaagatcttctggac
caggcgcgaagctcccgtgaactggagaccatcctgaatcaccgtgatgaccagagcgag
gagctggacccgcgggaatgcagagacctggccaagctaaagctggccatcaaatatcac
cagaaagagtttgtgtctcagccgaattgtcagcagctgttggctacactctggtacgat
ggcttcccgggatggcgtcgccggcactgggccgtgaagctggtcatgtgcatcatcatc
ggccttctcttcccagtgttttccattatctacctgctggctcctcggagctcactggga
ttcttcattaagaagcctttcatcaaattcatctgccatactgcctcttaccttaccttc
ctcttcctcctactcctcgcctcccagcacatcgcacgcaccaacctccacatgcagggc
ccaccgcctactgtagtggagtggatgatactgccctgggtgttagggtttatctgggct
gaaattaaggagatgtgggatggaggtttcactgaatacgttcatgactggtggaatctc
atggacttcgctatgaactcactttacttagcaaccatttctctgaagatggttgcttat
gtcaagtataacagctctcgtcctcgtgaggagtgggagatgtggcatccgacactgatg
gcagaggctctgttcgccatcgccaacatcttcagctccctgcggctgatctcgctcttc
accgccaactctcacctgggtccgctgcagatctctctcggccggatgctcctcgacatc
ctcaagttcctcttcatctactgcctggtgctgctggccttcgccaacggcctcaaccag
ctctacttctactacgagacgcaggctgcagacgagcccaaccactgcaagggtatccgc
tgcgaaaaacagaacaacgccttctccacgctattcgagaccctccagtctctgttctgg
tccatatttgggctgctgaatctttacgtcactaacgtgaaggcgaggcatgagttcact
gagtttgttggagcgaccatgttcggcacctacaacgtgatttctctggtcgtgctgctc
aacatgctcatcgctatgatgaacaactcctaccagcttatcgctgaccatgcagacatt
gagtggaagtttgccaggacgaagctgtggatgagttattttgatgagggcgggacactt
cctccaccattcaacatcgttcccagcccaaagtcagcctggtacctctgctgctggctc
cacaggtggctgtgctggagaggtgatgctccacacagcgagaaacatgagaacctcaag
gatttaacagaaaaacatgccgacaggattattcagaataaacactatcaggaggtgatt
cgtagtctggtgaagaggtatgtagcagctatgatccgcagtgcaaagacaaacgaagga
ttaacagaggagaactttaaggagctgaagcaggacatttctagttttcgttatgaagtt
atggacctcctcggaaaccgaaagccgccacgccgcacgtactcttcgagtagcgaggcc
acgcttcgagacgagggcagcgacgacggccacagcgacggtagcaaagccaagatcaaa
acagctccgggtgccggttccccgtacggagtctcggctctcttccactccctctctgga
atggagttccccacgtccaccacagcaataagtacctcccacagggaggacagaccaaag
atcaacgggctgaggaaaaacccctcgccctgctcttccacttcctcagtgactgcggcc
gggccggccctctccagaacgtggagcaggttcacgcgcttctcgggctccaagaagacc
tccttcagacggctggggctgctgttctcccgcatgggcagtcaccttccccagcctgct
ggcgttacttccgccacctacaccatctcagacggacttctccagcctccaggagcctgg
agagacctgggcatctcccgtggcgatggtcccgtcacccgcagcgagaccagcctcaat
cacgcagatacgcccgccgccgactctgtcagtgttcccacctccacaaacagacagaga
accaatgggagggacattctgttgactttagggcccctggctcctcctccttccctgcac
tgtgcttccagtttttctgcctccagttcccgtctcctggactcgagtgaggacgtgttt
cagggattagttgggccttacgatggacacgtgccggacgcctccgaccgcggggcggag
catgacgactcagtgaccacacagttatag
DBGET
integrated database retrieval system
