Astyanax mexicanus (Mexican tetra): 111188173
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Entry
111188173 CDS
T05042
Name
(RefSeq) protocadherin gamma-C5-like isoform X7
KO
K16497
protocadherin gamma subfamily C
Organism
amex
Astyanax mexicanus (Mexican tetra)
Brite
KEGG Orthology (KO) [BR:
amex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
amex04515
]
111188173
Cell adhesion molecules [BR:
amex04515
]
Cadherins
Protocadherins
111188173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_FAT4_N
Cadherin_C_2
PepSY
Motif
Other DBs
NCBI-GeneID:
111188173
NCBI-ProteinID:
XP_015464279
Ensembl:
ENSAMXG00000016031
LinkDB
All DBs
Position
2:complement(66480105..66576596)
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AA seq
956 aa
AA seq
DB search
MELRQRSRYPEWRALWLALTLSCLSSAFGELRYSVQEEQKPGSFVGGIATDLGLTPQRLT
ERNVRVISDSEYFEINAASGALVIREIIDRERMCESSAACYLHLQIVLQDPLEIHRVLVD
ILDVNDNAPQFPARNSSLEISEAAAPGTRFRLESARDPDVGVNSLRTYQLAPSDCFSLRV
ETKSDGSKFPELVLEKALDRETEDSFRLLLTAVDGGQPEKSGTTLLLIKILDVNDNAPVF
DQSVKRVSLLENSPVGTIVAKLNATDADSGMNGEVTFLFGKYTPNRIHNLFSVDSKTGEI
RVTGEVDYEQTSVYDITFEARDGGTPAMEGSCNVKVEITDVNDNTPEVTLTSLSSPISED
AKTGTVIALISAKDLDSDKNGQLTLKVSPGLPFKLKSAFGEHYTLVTDGRLDRETVPEYT
VVVTATDAGTPPLSSQKTFVVSLSDVNDNAPLFSQSSYSVDIPENNSPGTPIVAVSASDP
DLGDNARLTYSILASTIHGSPVSSYVYINPENGNIFTMRSIDYEQMNAFKIEVQVHDAGT
PPHSSNVTVHVFVIDQNDNSPVILYPAHSDDSGLQLTVPRSAPVGHLVNKIVGFDPDSGH
NAWLFYSITGDDAAFFRIGANTGELRTTRKLADEDQDGRDSSAYSFVVVVQDNGQPSKST
SVPITVSVEEKSIDAVPDSHKPFSQKVSGMTDVTLYLIISLGCVTLVFLVTTLVVVVRCL
KNKDDLTCCYSRKGFRSRHAYQQRPHKDLHLQLNTDGPIRYMEVVGGPQEPHTRTYRPCY
STLSSRSDFVFVKTPMLSHNNTLNMTLTRKHLMNSANEQKPPNTDWRFTQNQRPGPSGAA
ATPEVAVGTGPWPNPPTEAEQLQALMAAANEVSEATNTLGPGTMGLSTRYSPQFTLQHVP
DYRQNVYIPGSTATLTANPQQPQQALPPPQVSAAQPEPPKAQTPASKKKSTKKEKK
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggagttgaggcagaggagccgctacccggaatggcgcgcgctctggctcgcgcttacc
ctgtcctgtctgtccagcgcgtttggggagctcaggtactccgtccaggaggagcagaag
ccgggctcctttgtgggaggcatagcaacggatttgggcctcactcctcagaggctgact
gagagaaacgtgcgtgtcatttcggactcggaatactttgaaatcaacgccgccagcggc
gctctggtcatccgggagattatcgacagggagcgcatgtgcgagtcgagcgcggcgtgt
tatctacaccttcagatcgttctccaggacccgctggaaatacatcgcgtgctcgtggat
atcttggacgttaacgacaacgcgccgcagttcccggcgaggaactcctcactggagatc
tcggaggcggccgcgcctggaacgcgcttccgtctggagagtgcgcgggaccccgacgtg
ggtgtgaactctttgcgtacgtaccaactagcacccagcgactgcttcagtctacgcgtc
gagaccaagagcgacggtagtaagttcccggagctcgtgttggagaaggccttagaccga
gagacggaggactcgtttcggctgctgctcacggccgtggacggtgggcaacccgaaaaa
tcgggcaccaccctgctgctcattaaaatcctggacgtgaatgacaacgcaccagttttt
gatcagtctgtgaaaagggtcagtcttttagaaaactctccagtgggaactattgtagct
aaactcaacgccactgatgcagactctggaatgaatggggaagtgactttcctgttcggt
aaatacaccccaaacagaattcataatcttttcagtgtggattctaaaactggggaaatt
cgtgttacaggggaggtggattatgagcaaaccagtgtatatgacattacatttgaggcc
cgggatggcgggacccctgccatggaaggttcttgtaatgtcaaagtagaaataacagat
gtgaatgataacactccagaagtgacacttacctcactctctagccccatcagcgaggat
gctaaaaccggcactgtcatcgcactaatcagcgcaaaagacttagactctgataagaat
ggccagctgacgttaaaggtgtcaccaggcttgccatttaaactcaaatctgcttttggg
gaacattacacccttgtcactgatggccgattagacagagagactgtccctgagtacact
gttgttgtcacagcaacagatgcaggcacacctcccttgtcttctcagaagacatttgtg
gttagtctttctgatgtaaatgataatgctccactgttctcccaatcctcttactctgta
gacattccggagaataattcccccggtactcccatagtggctgtctctgcttcagaccca
gatttgggagacaatgcccgcctaacatactcaattttagcctccacaatccatggcagc
cctgtgtcatcttatgtctacatcaatccagaaaatgggaatatctttactatgcgctcg
atagactatgagcagatgaatgcttttaaaatagaagtgcaggtacatgatgctggaacg
cccccacacagctccaatgtcaccgtccatgtttttgtcattgatcagaatgacaactca
cctgtcattctttaccccgcccactcggacgactcaggcctccagctgaccgtcccccgc
tctgcccctgtgggccacctagtgaacaagattgtaggctttgacccggacagcgggcac
aatgcttggctgttctacagcatcactggagacgatgctgcattcttccgcattggagca
aacacaggtgagctgcgcaccacacgaaaactggctgacgaagaccaagatggcagggat
agttcagcttacagttttgtggtggtcgtgcaggacaatggccagccttccaagtccact
tcagtccccatcacagtcagtgtggaggagaagagcattgatgctgttccggattcccac
aaacctttctcccagaaagttagcgggatgacagatgtcaccttgtacctcatcatatcg
ctgggctgtgtgacattagtctttcttgtaaccactctagtggtggtggtgcggtgcctc
aaaaacaaggacgacttgacatgctgctactcaaggaagggcttccgttccaggcatgcc
taccagcagcgccctcataaagacctacacctccagctcaacacagatgggccaatccgg
tacatggaggtggtcgggggccctcaggagccccacacacgcacatataggccctgctac
tcaactctttccagcaggagtgactttgtgtttgtcaagactcccatgctgagccataac
aacacattaaacatgactctaacgaggaagcacttaatgaactcagccaatgagcaaaaa
ccccctaacactgactggcgttttacccagaaccagcggcccggacccagcggagctgct
gccaccccagaggttgctgtgggaacaggaccctggcccaacccccccactgaagccgag
cagctccaggctcttatggccgccgccaatgaagtgagtgaggctaccaacactctgggt
ccgggcaccatgggcttgagcacccgctacagcccgcagttcaccctgcagcacgtcccc
gactaccgtcagaatgtctacatccccggcagcacggctacgctcactgccaacccccag
cagccccagcaggccctgcccccgcctcaggtctctgccgcccagcctgaaccaccaaag
gcccagacacctgccagcaagaagaagtccaccaagaaggagaagaagtaa
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