Acetobacter oryzifermentans: WG31_09955
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Entry
WG31_09955 CDS
T04478
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asv
Acetobacter oryzifermentans
Pathway
asv03030
DNA replication
asv03410
Base excision repair
asv03420
Nucleotide excision repair
asv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WG31_09955
03410 Base excision repair
WG31_09955
03420 Nucleotide excision repair
WG31_09955
03430 Mismatch repair
WG31_09955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asv03032
]
WG31_09955
03400 DNA repair and recombination proteins [BR:
asv03400
]
WG31_09955
Enzymes [BR:
asv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WG31_09955
DNA replication proteins [BR:
asv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WG31_09955
DNA repair and recombination proteins [BR:
asv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WG31_09955
NER (nucleotide excision repair)
GGR (global genome repair) factors
WG31_09955
MMR (mismatch excision repair)
DNA ligase
WG31_09955
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WG31_09955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
HHH_5
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
ANA14278
LinkDB
All DBs
Position
2102247..2104334
Genome browser
AA seq
695 aa
AA seq
DB search
MPEPAFLPATMTLQQAREELEHLAAEIAHHNVAYDQHNAPEISDAEYDALRRRYDAIVAQ
HPQAEPENSAAQAVGAAPDTAFGKHIHLVPMLSLDNVFDREDFEGFISRASRFLGLDQEA
TEQLIFVGEPKIDGLSISLTYEKGRFVRGTTRGDGTEGEDVTANLRTLKDLPLRLSGSYP
DLIEIRGEVFLSKKHFLELNAAQEAANKQLFANPRNAAAGSLRQLDSKITAQRPLSLFAY
ALGFCSEKISRSHWAYLEQLKAWGFPVNPLSRQIKGVEDAEVFFAEVSQNRAELAYDIDG
VVYKIDDLALQERLGFAGRAPRWAIAWKFPAEQAVTRLKEIEIQVGRTGALTPVAHLEPV
NVGGVLVMRATLHNEDEIARKDVRPGDMVFIQRAGDVIPQVLGVAPSTDSTPRQAPYQFP
DRCPACGAAAVRPEGEAVRRCTGGLTCPAQVVERLIHFVSRQAFDIEGLGDRSIREFHDI
GLILTPGDIFRLHEHAADIEKRDGWGEQSVQKLLQAIESRRTISLSRFIYALGIRRIGAS
NARLLARHYGTYENWFNQMQAAAIIGSDARLELGSITGIGTTTAEDLVAFVAEEHNLQTL
ADLRANLTITEETAASEGALAGKTIVFTGTLHTMTRPEAKATAERMGAKVSDSVSKKTDL
VVLGEKAGSKAKKAVELGLQTMDEAEWNAFCSEQE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacccgcctttcttcccgctacaatgacactccaacaagcacgggaagaactg
gagcaccttgctgccgaaattgcccaccataatgtggcttacgatcagcacaatgcgcca
gaaatcagtgatgcagaatatgatgccctgcgcaggcggtatgatgccattgtggctcag
cacccacaggccgaaccagaaaacagcgcagcccaagccgtaggggccgcacccgataca
gcttttggcaagcacatccaccttgtgcccatgctctcgctggacaacgtgtttgaccgg
gaagattttgaaggcttcatcagccgcgcctcacgctttttagggctggatcaggaagcg
acagaacaactgatttttgtaggggagcccaaaattgatggcctttccatcagcctaacc
tacgaaaaaggccgttttgtacgtggcaccacccgcggagatggcactgaaggcgaagac
gttaccgccaatttgcgcacgcttaaggatttgccgttacgcctttctggctcctacccc
gatctcatcgaaattcgtggtgaggtttttctttccaaaaagcactttctggaactcaac
gcagcgcaagaagctgcaaacaaacagctgtttgccaacccgcgtaatgcagcagcgggt
tcattacggcagctagattccaaaattacggcacaacgcccgctgtccttattcgcttat
gcgcttggtttctgctcagaaaaaatcagccgcagccattgggcttatctggagcaactc
aaagcatggggttttccggttaatccgctttctcgccagattaaaggcgtagaagatgcc
gaagtcttttttgcggaagtcagccagaatcgggctgaacttgcctacgatattgatggc
gttgtttacaaaattgatgatctggccctgcaagaacgcttaggttttgcaggccgcgcc
ccgcgctgggccattgcgtggaagtttccggcggaacaggcggttacccgcctgaaagaa
atagaaattcaggttggacgcacaggtgcgcttacccctgttgcacatctggagccggta
aatgttggtggtgtgctggttatgcgcgcaaccttgcataatgaagatgaaattgcccgc
aaggatgtccgccccggtgatatggtttttatccagcgggcgggagatgttatccctcaa
gtgttgggcgttgccccttctacagatagcacgccccggcaggccccttatcagttcccc
gatcgttgccctgcttgcggtgcggcggcggtgcggccagaaggcgaagctgtgcgccgt
tgcacaggtgggctcacctgccccgcgcaggttgtggagcggctgatccactttgtttcc
cgccaagcgtttgacattgaaggcttgggagaccgcagtattcgtgaattccacgatatc
ggcctgattttaacacctggtgatattttccgtctgcatgaacacgccgcagatatagaa
aagcgcgatggttggggcgagcaatctgttcagaagctgttgcaggccatagagagccgc
cgcaccatttctctttctcgttttatttatgcgcttggcatccgtcggattggcgccagc
aatgcccgcctgctggcacgccactatggcacctatgaaaactggtttaaccagatgcag
gctgccgccattattggatctgacgcacggctggaactgggttccattaccggtataggc
acgaccacagcggaagatctggtggcctttgtggcagaagaacataatctgcaaacattg
gcggatttacgcgcaaatctgaccataacggaagaaaccgcagcatccgaaggtgccttg
gctggcaaaaccattgtgtttaccggcaccctacacaccatgacacggccagaagccaaa
gcaacggcagaacgcatgggcgctaaggtttcggattctgtttccaaaaaaacagatctg
gttgttctgggggaaaaagctggctcaaaggccaaaaaggctgtggaacttggccttcaa
accatggatgaagcagaatggaacgctttttgttccgagcaggaatag
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