Agrobacterium vitis VAR03-1: RvVAR031_22720
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Entry
RvVAR031_22720 CDS
T08810
Symbol
tolC
Name
(GenBank) transporter
KO
K12340
outer membrane protein
Organism
avf
Agrobacterium vitis VAR03-1
Pathway
avf01501
beta-Lactam resistance
avf01503
Cationic antimicrobial peptide (CAMP) resistance
avf02020
Two-component system
avf03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
avf00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RvVAR031_22720 (tolC)
09132 Signal transduction
02020 Two-component system
RvVAR031_22720 (tolC)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
RvVAR031_22720 (tolC)
01503 Cationic antimicrobial peptide (CAMP) resistance
RvVAR031_22720 (tolC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avf02000
]
RvVAR031_22720 (tolC)
02044 Secretion system [BR:
avf02044
]
RvVAR031_22720 (tolC)
01504 Antimicrobial resistance genes [BR:
avf01504
]
RvVAR031_22720 (tolC)
Transporters [BR:
avf02000
]
Other transporters
Pores ion channels [TC:
1
]
RvVAR031_22720 (tolC)
Secretion system [BR:
avf02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
RvVAR031_22720 (tolC)
RTX toxin transporter
RvVAR031_22720 (tolC)
Multiple protein transporter
RvVAR031_22720 (tolC)
RaxAB-RaxC type I secretion system protein
RvVAR031_22720 (tolC)
Antimicrobial resistance genes [BR:
avf01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump AcrEF-TolC [MD:
M00696
]
RvVAR031_22720 (tolC)
Multidrug resistance, efflux pump MdtEF-TolC [MD:
M00697
]
RvVAR031_22720 (tolC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OEP
Motif
Other DBs
NCBI-ProteinID:
BCH54662
LinkDB
All DBs
Position
1:complement(2484454..2485857)
Genome browser
AA seq
467 aa
AA seq
DB search
MSSLRNVAYAAAFLPLFFQPAVLHAETIFGAMEKAYKNNPDLNSVRAALRATDESVTIAK
AGYRPQLGFSVSGTQSSFANFNGTAIGNLPADKYSADYYKSDVQLTLTQQIFDGFQTLNN
VRSSEAGVLSNRESMKADEIQILLGAAQAYADVARDQQIVSIRRQNLSFLQEQLKAANAR
LEVGEGTKTDVSQAEAQLAGADSLLASAIAQLRQSEASYMQVVGEMPKDVRQPVRATKAM
PTNLDKAVALGIREHPSVLAALHAVTSAQYQVKSAEGSLLPGVSLQGSLDRHNTDNPSES
TDRDYSAASITAQVKIPLYQGGSEYGQIRKAKETVGAQELKVDYARLSVRKQIMTAFAQM
QAATAAITSGRKQVAAAKLALQGVIEERNVGQKITLDVLNSQQTALDAQESLVNAQRNEV
VASYSLLAATGTLTVRSQGLQVAEYKAEEHYDAVKDKWFGLRAANGK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgagccttcgtaacgtggcttatgccgcagcatttcttccgctgttttttcaacct
gccgtgctgcatgccgaaaccatcttcggtgccatggaaaaggcttataagaacaatccc
gatctgaactcggtgcgtgcagccctgagggcaacggatgaaagcgtgacgattgccaag
gccggctacaggccgcagctgggcttttccgtctccggcactcagtcttcctttgccaat
ttcaacggcaccgccatcggcaatttgccggcggataaatattcggcggattattataaa
tccgacgtgcagctgacattgacccagcagattttcgatgggttccagacgctcaataat
gttcgctcctcggaggcgggcgtgctttccaaccgggaaagcatgaaggcggatgagatc
cagatcctgctcggcgcagctcaggcctatgccgatgtggcgcgggaccagcagatcgtc
agtatccgccgccagaacctgagcttccttcaagaacagctcaaggctgccaatgcgcgg
cttgaggtgggcgaaggcaccaaaaccgatgttagccaggcagaggcgcaactggcgggt
gccgacagtctgctggcctctgctatcgcccagctgagacagagcgaagcatcctatatg
caggtcgtcggcgagatgccgaaggacgtgcgccagccggtgcgcgccaccaaggcgatg
ccgaccaatctcgataaggccgttgctttgggaatcagggaacatcccagcgtgcttgca
gcgctgcatgcggtaacgtcagcacaatatcaggtgaaatcggcggaagggagcctgctt
ccaggcgtcagccttcagggtagcctcgatcgccacaatacggataatccaagcgagtcg
accgaccgcgattattctgcggcctcgattacagcgcaggtgaaaattccgctctatcag
ggcggttcggaatatggccagatccgcaaagccaaggaaaccgttggtgcgcaggaactt
aaagtcgattacgcccgattgagcgtgcgcaagcagatcatgaccgcttttgcccagatg
caagccgcaacggcggccatcacctcgggccgcaagcaggttgctgccgctaagctcgcc
ttgcagggcgttatcgaggaacgcaatgtcggccagaaaatcacccttgacgttttgaac
tcgcagcagaccgcactcgacgctcaggaaagcctggttaatgcacagcgcaatgaagtg
gtggccagctactcgttgctcgcggcgaccggcaccttgacggtcaggagccaaggattg
caggtggcggaatataaggcagaagaacattacgatgccgtcaaggacaagtggttcgga
ttgcgggctgccaacggcaagtaa
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