KEGG   PATHWAY: avn00920
Entry
avn00920                    Pathway                                
Name
Sulfur metabolism - Azotobacter vinelandii DJ
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
avn00920  Sulfur metabolism
avn00920

Module
avn_M00021  Cysteine biosynthesis, serine => cysteine [PATH:avn00920]
avn_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:avn00920]
Other DBs
GO: 0006790
Organism
Azotobacter vinelandii DJ [GN:avn]
Gene
Avin_30540  cysP; Sulfate ABC transporter-binding component-CysP-like protein [KO:K02048]
Avin_31720  Sulfate-binding precursor protein [KO:K23163]
Avin_31730  cysT; sulfate ABC transporter, permease protein CysT [KO:K02046]
Avin_31740  cysW; sulfate ABC transporter, permease protein CysW [KO:K02047]
Avin_31750  cysA; sulfate ABC transporter [KO:K02045] [EC:7.3.2.3]
Avin_31390  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Avin_30510  ssuA; ABC transporter periplasmic aliphatic sulfonate-binding protein [KO:K15553]
Avin_21720  ABC transporter, aliphatic sulfonate binding protein [KO:K15553]
Avin_40070  periplasmic sulfonate-binding protein of ABC transporter [KO:K15553]
Avin_31680  ABC transporter, aliphatic sulfonate substrate-binding protein [KO:K15553]
Avin_21640  nitrate/sulfonate/bicarbonate ABC transporter, substrate binding protein family 3 [KO:K15553]
Avin_08130  ABC transporter, sulfate ester binding protein [KO:K15553]
Avin_22420  ABC nitrate/sulfonate/bicarbonate family transporter protein [KO:K15553]
Avin_21970  ABC transporter, taurine periplasmic binding protein [KO:K15553]
Avin_21910  asfC; ABC transporter, substrate-binding protein, aliphatic sulphonate [KO:K15553]
Avin_29390  ABC-type nitrate/sulfonate/bicarbonate transport system,substrate binding component [KO:K15553]
Avin_03760  ABC transporter, substrate-binding protein, aliphatic sulphonate [KO:K15553]
Avin_08170  sulfate ester transport system substrate-binding protein [KO:K15553]
Avin_22500  ABC nitrate/sulfonate/bicarbonate family transporter protein [KO:K15553]
Avin_31400  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Avin_31360  ABC transporter periplasmic aliphatic sulfonate-binding protein [KO:K15553]
Avin_31380  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Avin_30880  ABC transporter, periplasmic substrate-binding protein [KO:K15553]
Avin_31110  ABC transporter substrate binding protein [KO:K15553]
Avin_30920  ABC transporter, periplasmic binding protein [KO:K15553]
Avin_30490  ssuC; aliphatic sulfonate ABC transporter permease protein [KO:K15554]
Avin_21600  aliphatic sulfonates ABC transporter, inner membrane component [KO:K15554]
Avin_22520  ABC transporter inner-membrane protein [KO:K15554]
Avin_08100  ABC transporter, permease component [KO:K15554]
Avin_22530  ABC transporter inner-membrane protein [KO:K15554]
Avin_29400  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [KO:K15554]
Avin_31120  ABC transporter permease protein [KO:K15554]
Avin_30900  ABC transporter, permease protein [KO:K15554]
Avin_21990  ABC transporter, inner membrane permease component [KO:K15554]
Avin_30480  ssuB; aliphatic sulfonate ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
Avin_22550  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
Avin_29410  ABC transporter, ATP binding component [KO:K15555] [EC:7.6.2.14]
Avin_21610  aliphatic sulfonates ABC transporter, ATP binding component [KO:K15555] [EC:7.6.2.14]
Avin_08090  ABC transporter, ATP-binding component [KO:K15555] [EC:7.6.2.14]
Avin_30910  ABC transporter, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
Avin_21980  ABC transporter, ATP binding component [KO:K15555] [EC:7.6.2.14]
Avin_31130  ABC transporter ATP binding protein [KO:K15555] [EC:7.6.2.14]
Avin_43870  msuD; Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Avin_31330  alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Avin_21850  ssuD; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Avin_30500  ssuD; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Avin_03710  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Avin_30520  ssuE; FMN reductase [KO:K00299] [EC:1.5.1.38]
Avin_12980  cysN; Adenylylsulfate kinase/Sulfate Adenylyltransferase subunit 1 [KO:K00955] [EC:2.7.7.4 2.7.1.25]
Avin_12970  cysD; Phosphoadenosine phosphosulfate reductase/sulfate adenyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
Avin_24694  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
Avin_16180  cysC1; Adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
Avin_00500  cysC2; Adenylylsulfate kinase, C-terminal domain protein [KO:K00860] [EC:2.7.1.25]
Avin_05500  3(2),5-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
Avin_23150  cysH; Phosphoadenosine phosphosulfate reductase CysH-type [KO:K00390] [EC:1.8.4.8 1.8.4.10]
Avin_12370  sulfite reductase, NADPH flavoprotein alpha-component [KO:K00380] [EC:1.8.1.2]
Avin_12440  sulfite reductase (NADPH) flavoprotein alpha-component/iron-regulated membrane protein [KO:K00380] [EC:1.8.1.2]
Avin_27520  cysI; Sulfite reductase, beta subunit (hemoprotein) [KO:K00381] [EC:1.8.1.2]
Avin_32980  3-mercaptopyruvate sulfurtransferase protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Avin_07450  rhdA; Rhodanese [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Avin_46860  glpE; Thiosulfate sulfurtransferase [KO:K02439] [EC:2.8.1.1]
Avin_40420  cysE2; Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Avin_20980  cysE3; Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Avin_01650  cysE1nif; nitrogen fixation serine O-acetyltransferase CysE1 [KO:K00640] [EC:2.3.1.30]
Avin_32850  cysK; Cysteine synthase K/M:Cysteine synthase K [KO:K01738] [EC:2.5.1.47]
Avin_03040  metX; Homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Avin_43850  metB; Cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
Avin_34140  metZ; O-succinylhomoserine sulfhydrylase protein [KO:K10764] [EC:2.5.1.-]
Avin_43560  sfnG; dimethyl sulfone monooxygenase; SfnG [KO:K17228] [EC:1.14.14.35]
Avin_25250  acyl-activating enzyme [KO:K20034] [EC:6.2.1.44]
Avin_25210  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Avin_17380  Acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Avin_16400  Acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Avin_45920  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
avn00260  Glycine, serine and threonine metabolism
avn00270  Cysteine and methionine metabolism
avn00680  Methane metabolism
avn00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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