KEGG   PATHWAY: bci03030
Entry
bci03030                    Pathway                                
Name
DNA replication - Baumannia cicadellinicola Hc (Homalodisca coagulata)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
bci03030  DNA replication
bci03030

Organism
Baumannia cicadellinicola Hc (Homalodisca coagulata) [GN:bci]
Gene
BCI_0066  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
BCI_0107  ssb; single-strand binding protein [KO:K03111]
BCI_0115  dnaX; DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
BCI_0132  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
BCI_0233  holA; DNA-directed DNA polymerase delta chain [KO:K02340] [EC:2.7.7.7]
BCI_0286  holC; DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
BCI_0430  holB; DNA polymerase III, delta' subunit [KO:K02341] [EC:2.7.7.7]
BCI_0473  dnaQ; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
BCI_0474  rnhA; RNase H [KO:K03469] [EC:3.1.26.4]
BCI_0538  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
BCI_0550  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
BCI_0617  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
BCI_0625  holD; DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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