KEGG   PATHWAY: bmj00920
Entry
bmj00920                    Pathway                                
Name
Sulfur metabolism - Burkholderia multivorans ATCC 17616 (Tohoku)
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bmj00920  Sulfur metabolism
bmj00920

Other DBs
GO: 0006790
Organism
Burkholderia multivorans ATCC 17616 (Tohoku) [GN:bmj]
Gene
BMULJ_00034  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_00035  ssuB; sulfonate/nitrate/taurine transport system ATP-binding protein [KO:K15555] [EC:7.6.2.14]
BMULJ_00036  ssuC; sulfonate/nitrate/taurine transport system permease protein [KO:K15554]
BMULJ_00135  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
BMULJ_00294  cysP; sulfate transport system substrate-binding protein [KO:K02048]
BMULJ_01534  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_01574  ssuD; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
BMULJ_01575  ssuC; sulfonate/nitrate/taurine transport system permease protein [KO:K15554]
BMULJ_01576  ssuB; sulfonate/nitrate/taurine transport system ATP-binding protein [KO:K15555] [EC:7.6.2.14]
BMULJ_01606  cysP; sulfate transport system substrate-binding protein [KO:K23163]
BMULJ_01607  cysU; sulfate transport system permease protein [KO:K02046]
BMULJ_01608  cysW; sulfate transport system permease protein [KO:K02047]
BMULJ_01609  cysA; sulfate transport system ATP-binding protein [KO:K02045] [EC:7.3.2.3]
BMULJ_01728  [KO:K17218] [EC:1.8.5.4]
BMULJ_01876  alkK; medium-chain-fatty-acid-CoA ligase [KO:K20034] [EC:6.2.1.44]
BMULJ_01951  [KO:K15553]
BMULJ_01952  ssuC; sulfonate/nitrate/taurine transport system permease protein [KO:K15554]
BMULJ_01953  ssuB; sulfonate/nitrate/taurine transport system ATP-binding protein [KO:K15555] [EC:7.6.2.14]
BMULJ_02057  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
BMULJ_02435  cysN; sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
BMULJ_02436  cysD; sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
BMULJ_02437  cysH; phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
BMULJ_02439  cysI; NADPH-dependent sulfite reductase hemoprotein beta-component [KO:K00381] [EC:1.8.1.2]
BMULJ_02536  [KO:K17285] [EC:1.8.3.4]
BMULJ_02683  [KO:K20035] [EC:1.3.99.41]
BMULJ_02834  ssuC; sulfonate/nitrate/taurine transport system permease protein [KO:K15552]
BMULJ_02835  ssuB; sulfonate/nitrate/taurine transport system ATP-binding protein [KO:K10831] [EC:7.6.2.7]
BMULJ_02836  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15551]
BMULJ_03228  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
BMULJ_03421  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_03692  sseA; thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BMULJ_03897  metB; cystathionine gamma-synthase [KO:K10764] [EC:2.5.1.-]
BMULJ_03940  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_03945  ssuB; sulfonate/nitrate/taurine transport system ATP-binding protein [KO:K15555] [EC:7.6.2.14]
BMULJ_03946  [KO:K15554]
BMULJ_03947  ssuC; sulfonate/nitrate/taurine transport system permease protein [KO:K15554]
BMULJ_03948  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_03950  [KO:K15553]
BMULJ_03986  fdh; formate dehydrogenase [KO:K21307] [EC:1.8.5.6]
BMULJ_03987  nrfC; formate-dependent nitrite reductase Fe-S protein [KO:K21308]
BMULJ_03988  dmsC; anaerobic dimethyl sulfoxide reductase subunit C [KO:K21309]
BMULJ_04166  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_04168  ssuB; sulfonate/nitrate/taurine transport system ATP-binding protein [KO:K15555] [EC:7.6.2.14]
BMULJ_04169  ssuC; sulfonate/nitrate/taurine transport system permease protein [KO:K15554]
BMULJ_04170  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_04172  ssuD; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
BMULJ_04196  menE; O-succinylbenzoic acid-CoA ligase [KO:K20034] [EC:6.2.1.44]
BMULJ_04356  nos; nitric-oxide synthase [KO:K00380] [EC:1.8.1.2]
BMULJ_04468  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_04469  ssuC; sulfonate/nitrate/taurine transport system permease protein [KO:K15554]
BMULJ_04470  ssuB; sulfonate/nitrate/taurine transport system ATP-binding protein [KO:K15555] [EC:7.6.2.14]
BMULJ_04483  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_05035  [KO:K00299] [EC:1.5.1.38]
BMULJ_05427  [KO:K00299] [EC:1.5.1.38]
BMULJ_05428  ssuD; alkanesulfonate monooxygenase [KO:K17228] [EC:1.14.14.35]
BMULJ_05478  ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein [KO:K15553]
BMULJ_05479  ssuB; sulfonate/nitrate/taurine transport system ATP-binding protein [KO:K15555] [EC:7.6.2.14]
BMULJ_05480  ssuC; sulfonate/nitrate/taurine transport system permease protein [KO:K15554]
BMULJ_06135  [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00073  L-Methionine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00163  Propanoate
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00511  Acrylic acid
C00580  Dimethyl sulfide
C00894  Propenoyl-CoA
C00979  O-Acetyl-L-serine
C01013  3-Hydroxypropanoate
C01118  O-Succinyl-L-homoserine
C01180  4-Methylthio-2-oxobutanoic acid
C01861  Trithionate
C02084  Tetrathionate
C03172  S-Methyl-L-methionine
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22315  (2R)-2-Hydroxy-4-(methylsulfanyl)butanoate
C22316  (2R)-4-(Dimethylsulfaniumyl)-2-hydroxybutanoate
C22834  Protein-trisulfide
C23001  3-Aminopropyl(dimethyl)sulfanium
C23002  3-Dimethylsulfoniopropionaldehyde
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bmj00260  Glycine, serine and threonine metabolism
bmj00270  Cysteine and methionine metabolism
bmj00640  Propanoate metabolism
bmj00680  Methane metabolism
bmj00720  Other carbon fixation pathways
KO pathway
ko00920   

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