KEGG   PATHWAY: bxb00920
Entry
bxb00920                    Pathway                                
Name
Sulfur metabolism - Paraburkholderia xenovorans LB400
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bxb00920  Sulfur metabolism
bxb00920

Module
bxb_M00021  Cysteine biosynthesis, serine => cysteine [PATH:bxb00920]
bxb_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:bxb00920]
Other DBs
GO: 0006790
Organism
Paraburkholderia xenovorans LB400 [GN:bxb]
Gene
DR64_1943  sulfate ABC transporter, sulfate-binding family protein [KO:K02048]
DR64_161  sulfate ABC transporter, sulfate-binding family protein [KO:K23163]
DR64_160  cysT; sulfate ABC transporter, permease protein CysT [KO:K02046]
DR64_159  cysW; sulfate ABC transporter, permease protein CysW [KO:K02047]
DR64_158  cysA; sulfate ABC transporter, ATP-binding family protein [KO:K02045] [EC:7.3.2.3]
DR64_1886  tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551]
DR64_6025  tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551]
DR64_8340  tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551]
DR64_1884  binding--dependent transport system inner membrane component family protein [KO:K15552]
DR64_6023  binding--dependent transport system inner membrane component family protein [KO:K15552]
DR64_8342  binding--dependent transport system inner membrane component family protein [KO:K15552]
DR64_1885  ABC transporter family protein [KO:K10831] [EC:7.6.2.7]
DR64_6024  ABC transporter family protein [KO:K10831] [EC:7.6.2.7]
DR64_8341  ABC transporter family protein [KO:K10831] [EC:7.6.2.7]
DR64_4324  NMT1-like family protein [KO:K15553]
DR64_8310  NMT1-like family protein [KO:K15553]
DR64_4969  bacterial extracellular solute-binding s, 3 family protein [KO:K15553]
DR64_4735  NMT1/THI5 like family protein [KO:K15553]
DR64_5360  ABC transporter, substrate-binding , aliphatic sulfonates family protein [KO:K15553]
DR64_4314  bacterial extracellular solute-binding s, 3 family protein [KO:K15553]
DR64_8197  bacterial extracellular solute-binding s, 3 family protein [KO:K15553]
DR64_8270  ABC transporter, substrate-binding , aliphatic sulfonates family protein [KO:K15553]
DR64_8293  bacterial extracellular solute-binding s, 3 family protein [KO:K15553]
DR64_8322  ABC transporter, substrate-binding , aliphatic sulfonates family protein [KO:K15553]
DR64_7468  ABC transporter, substrate-binding , aliphatic sulfonates family protein [KO:K15553]
DR64_5829  bacterial extracellular solute-binding s, 3 family protein [KO:K15553]
DR64_8427  NMT1-like family protein [KO:K15553]
DR64_61  bacterial extracellular solute-binding s, 3 family protein [KO:K15553]
DR64_849  bacterial extracellular solute-binding s, 3 family protein [KO:K15553]
DR64_4319  NMT1-like family protein [KO:K15553]
DR64_8275  NMT1-like family protein [KO:K15553]
DR64_4326  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_4317  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_185  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_4737  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_4312  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_4313  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_4971  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_8194  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_8195  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_8294  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_8295  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_7470  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_8273  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_59  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_8312  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_5827  binding--dependent transport system inner membrane component family protein [KO:K15554]
DR64_4325  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_4970  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_184  ssuB; aliphatic sulfonates import ATP-binding protein SsuB [KO:K15555] [EC:7.6.2.14]
DR64_4736  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_4311  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_8193  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_8296  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_7469  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_8274  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_8311  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_4318  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_60  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_5828  ABC transporter family protein [KO:K15555] [EC:7.6.2.14]
DR64_4967  luciferase-like monooxygenase family protein [KO:K04091] [EC:1.14.14.5 1.14.14.34]
DR64_186  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
DR64_6849  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
DR64_7466  luciferase-like monooxygenase family protein [KO:K04091] [EC:1.14.14.5 1.14.14.34]
DR64_6335  NADPH-dependent FMN reductase family protein [KO:K00299] [EC:1.5.1.38]
DR64_1351  cysN; sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
DR64_1352  phosphoadenosine phosphosulfate reductase family protein [KO:K00957] [EC:2.7.7.4]
DR64_172  cysC; adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
DR64_1353  adenylylsulfate reductase, thioredoxin dependent family protein [KO:K00390] [EC:1.8.4.8 1.8.4.10]
DR64_7048  molybdopterin oxidoreductase Fe4S4 domain protein [KO:K21307] [EC:1.8.5.6]
DR64_7047  4Fe-4S dicluster domain protein [KO:K21308]
DR64_7046  DMSO reductase anchor subunit family protein [KO:K21309]
DR64_4320  oxidoreductase molybdopterin binding domain protein [KO:K17225]
DR64_8278  oxidoreductase molybdopterin binding domain protein [KO:K17225]
DR64_8277  cytochrome c family protein [KO:K22622] [EC:1.8.2.6]
DR64_4321  cytochrome c family protein [KO:K22622] [EC:1.8.2.6]
DR64_4363  FAD binding domain protein [KO:K00380] [EC:1.8.1.2]
DR64_1355  nitrite and sulphite reductase 4Fe-4S domain protein [KO:K00381] [EC:1.8.1.2]
DR64_6243  nitrite and sulphite reductase 4Fe-4S domain protein [KO:K00381] [EC:1.8.1.2]
DR64_6005  pyridine nucleotide-disulfide oxidoreductase family protein [KO:K17218] [EC:1.8.5.4]
DR64_5160  rhodanese-like domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
DR64_7519  rhodanese-like domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
DR64_3779  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
DR64_5947  bacterial transferase hexapeptide family protein [KO:K00640] [EC:2.3.1.30]
DR64_4578  bacterial transferase hexapeptide family protein [KO:K00640] [EC:2.3.1.30]
DR64_6862  bacterial transferase hexapeptide family protein [KO:K00640] [EC:2.3.1.30]
DR64_8306  bacterial transferase hexapeptide family protein [KO:K00640] [EC:2.3.1.30]
DR64_8190  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
DR64_2064  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
DR64_5928  alpha/beta hydrolase fold family protein [KO:K00641] [EC:2.3.1.31 2.3.1.46]
DR64_5203  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
DR64_4327  56kDa selenium binding family protein [KO:K17285] [EC:1.8.3.4]
DR64_8339  56kDa selenium binding family protein [KO:K17285] [EC:1.8.3.4]
DR64_5719  AMP-binding enzyme family protein [KO:K20034] [EC:6.2.1.44]
DR64_4424  AMP-binding enzyme family protein [KO:K20034] [EC:6.2.1.44]
DR64_5114  AMP-binding enzyme family protein [KO:K20034] [EC:6.2.1.44]
DR64_5718  hypothetical protein [KO:K20035] [EC:1.3.99.41]
DR64_3161  hypothetical protein [KO:K20035] [EC:1.3.99.41]
DR64_1715  hypothetical protein [KO:K20035] [EC:1.3.99.41]
DR64_7526  putative 3-hydroxybutyryl-CoA dehydratase [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bxb00260  Glycine, serine and threonine metabolism
bxb00270  Cysteine and methionine metabolism
bxb00680  Methane metabolism
bxb00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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