KEGG   PATHWAY: bxe00920
Entry
bxe00920                    Pathway                                
Name
Sulfur metabolism - Paraburkholderia xenovorans LB400
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bxe00920  Sulfur metabolism
bxe00920

Module
bxe_M00021  Cysteine biosynthesis, serine => cysteine [PATH:bxe00920]
bxe_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:bxe00920]
Other DBs
GO: 0006790
Organism
Paraburkholderia xenovorans LB400 [GN:bxe]
Gene
Bxe_A4267  Putative ABC sulfate transporter, periplasmic ligand binding protein [KO:K02048]
Bxe_A2470  ABC sulfate/thiosulfate transporter, periplasmic ligand binding protein, CysP [KO:K23163]
Bxe_A2469  ABC sulfate/thiosulfate transporter, innermembrane subunit, CysT [KO:K02046]
Bxe_A2468  ABC sulfate/thiosulfate transporter, innermembrane subunit, CysW [KO:K02047]
Bxe_A2467  ABC sulfate/thiosulfate transporter, ATPase subunit, CysA [KO:K02045] [EC:7.3.2.3]
Bxe_B0694  tauA; ABC taurine transporter, periplasmic ligand binding protein [KO:K15551]
Bxe_A4209  ABC taurine transporter, periplasmic ligand binding protein [KO:K15551]
Bxe_C0087  ABC taurine transporter, periplasmic ligand binding protein [KO:K15551]
Bxe_B0692  tauC; ABC taurine transporter, inner membrane subunit [KO:K15552]
Bxe_C0085  ABC taurine family transporter, inner membrane subunit [KO:K15552]
Bxe_A4207  ABC taurine transporter, inner membrane subunit [KO:K15552]
Bxe_B0693  tauB; ABC taurine transporter, ATPase subunit [KO:K10831] [EC:7.6.2.7]
Bxe_C0086  ABC taurine transporter, ATPase subunit [KO:K10831] [EC:7.6.2.7]
Bxe_A4208  ABC taurine transporter, ATPase subunit [KO:K10831] [EC:7.6.2.7]
Bxe_C0105  ABC aliphatic sulfonates transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_B3031  ABC aliphatic sulfonates transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_C0159  ABC aliphatic sulfonates transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_C0983  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_B2406  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_C0134  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_C0117  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_C0234  ABC sulfate ester family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_A2160  ABC sulfate ester transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_B2636  ABC sulfonate transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_B0495  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_C1388  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_A2357  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_A3159  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_A2165  ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_C0154  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_A2170  ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [KO:K15553]
Bxe_C0981  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_A2492  ABC aliphatic sulfonates transporter, innermembrane subunit [KO:K15554]
Bxe_B2408  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_B2638  ABC sulfonate transporter, inner membrane subunit [KO:K15554]
Bxe_C0132  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_C0237  ABC sulfate ester transporter, inner membrane subunit [KO:K15554]
Bxe_C0236  ABC sulfate ester transporter, inner membrane subunit [KO:K15554]
Bxe_A2159  Putative ABC sulfate ester transporter, innermembrane subunit [KO:K15554]
Bxe_A2158  Putative ABC sulfate ester transporter, innermembrane subunit [KO:K15554]
Bxe_C0133  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_A2163  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_C0156  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_A2355  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_C0115  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_B0493  ABC nitrate/sulfonate/bicarbonate family transporter, inner membrane subunit [KO:K15554]
Bxe_B2637  ABC sulfonate transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_A2491  ABC aliphatic sulfonates transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_C0238  ABC sulfate ester transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_C0131  ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_C0982  ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_B2407  ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_A2157  Putative ABC sulfate ester transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_C0155  ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_C0116  ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_A2164  ABC nitrate/sulfonate/bicarbonate transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_A2356  ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_B0494  ABC nitrate/sulfonate/bicarbonate family transporter, ATPase subunit [KO:K15555] [EC:7.6.2.14]
Bxe_B1542  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Bxe_A2493  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Bxe_C0985  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Bxe_B2634  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Bxe_B1014  NADPH-dependent FMN reductase family protein [KO:K00299] [EC:1.5.1.38]
Bxe_A3660  sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
Bxe_A3661  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
Bxe_A2481  adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
Bxe_A3662  phosphoadenylylsulfate reductase (thioredoxin) [KO:K00390] [EC:1.8.4.8 1.8.4.10]
Bxe_B1743  molybdopterin oxidoreductase [KO:K21307] [EC:1.8.5.6]
Bxe_B1742  iron-sulfur cluster-binding protein [KO:K21308]
Bxe_B1741  putative membrane protein [KO:K21309]
Bxe_C0151  Putative sulfite oxidase [KO:K17225]
Bxe_A2166  Putative sulfite oxidase, dehydrogenase subunit(SoxC) [KO:K17225]
Bxe_C0152  Putative sulfite oxidase cytochrome subunit [KO:K22622] [EC:1.8.2.6]
Bxe_A2167  Putative sulfite oxidase cytochrome c subunit, SoxD [KO:K22622] [EC:1.8.2.6]
Bxe_A2212  sulfite reductase (NADPH) alpha subunit [KO:K00380] [EC:1.8.1.2]
Bxe_B0922  putative nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
Bxe_A3664  sulfite reductase (NADPH) beta subunit [KO:K00381] [EC:1.8.1.2]
Bxe_B0674  Protein of unknown function DUF442 [KO:K17218] [EC:1.8.5.4]
Bxe_B2831  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Bxe_C0931  Putative rhodanese-like sulfur transferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Bxe_C0121  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Bxe_B2247  Putative hexapeptide transferase family protein [KO:K00640] [EC:2.3.1.30]
Bxe_B1555  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Bxe_B0616  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Bxe_A1621  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Bxe_C0241  cysteine synthase [KO:K01738] [EC:2.5.1.47]
Bxe_A4388  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Bxe_B0598  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Bxe_B2873  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
Bxe_A2173  Putative redox protein, selenium binding protein [KO:K17285] [EC:1.8.3.4]
Bxe_C0088  Putative selenium binding protein [KO:K17285] [EC:1.8.3.4]
Bxe_A2275  Putative medium-chain-fatty-acid-CoA ligase [KO:K20034] [EC:6.2.1.44]
Bxe_B0380  putative acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
Bxe_B2782  Putative AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
Bxe_B0379  putative acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Bxe_A1000  Putative acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Bxe_A4038  Putative acyl-CoA dehydrogenase oxidoreductase [KO:K20035] [EC:1.3.99.41]
Bxe_C0923  Putative enoyl-CoA hydratase/isomerase [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bxe00260  Glycine, serine and threonine metabolism
bxe00270  Cysteine and methionine metabolism
bxe00680  Methane metabolism
bxe00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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