KEGG   PATHWAY: cabi03050
Entry
cabi03050                   Pathway                                
Name
Proteasome - Chelonoidis abingdonii (Abingdon island giant tortoise)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
cabi03050  Proteasome
cabi03050

Other DBs
GO: 0000502
Organism
Chelonoidis abingdonii (Abingdon island giant tortoise) [GN:cabi]
Gene
116814869  PSMA6; proteasome subunit alpha type-6 isoform X1 [KO:K02730] [EC:3.4.25.1]
116815048  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
116816241  POMP; proteasome maturation protein [KO:K11599]
116816592  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
116816730  SEM1; 26S proteasome complex subunit SEM1 [KO:K10881]
116816782  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
116817027  PSMB2; proteasome subunit beta type-2 isoform X1 [KO:K02734] [EC:3.4.25.1]
116817232  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
116817415  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
116817657  PSMB4; proteasome subunit beta type-4 isoform X1 [KO:K02736] [EC:3.4.25.1]
116818442  PSMC4; LOW QUALITY PROTEIN: 26S proteasome regulatory subunit 6B [KO:K03063]
116820350  PSME3; proteasome activator complex subunit 3 isoform X1 [KO:K06698]
116821388  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
116821660  PSMB9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
116822092  PSMA3; proteasome subunit alpha type-3 isoform X1 [KO:K02727] [EC:3.4.25.1]
116822407  [KO:K02730] [EC:3.4.25.1]
116822692  PSMB6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
116822993  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
116823295  PSME4; proteasome activator complex subunit 4 isoform X1 [KO:K06699]
116823551  IFNG; interferon gamma [KO:K04687]
116826386  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
116826954  [KO:K02740] [EC:3.4.25.1]
116827133  PSMC1; 26S proteasome regulatory subunit 4 isoform X1 [KO:K03062]
116827607  PSMC5; 26S proteasome regulatory subunit 8 isoform X1 [KO:K03066]
116828190  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
116829867  PSMD3; LOW QUALITY PROTEIN: 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
116831407  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
116831729  [KO:K06693]
116832612  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
116832629  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
116833165  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 isoform X1 [KO:K03035]
116834121  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
116835838  PSMA8; proteasome subunit alpha-type 8 isoform X1 [KO:K02731] [EC:3.4.25.1]
116836178  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
116836371  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
116836728  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 isoform X1 [KO:K06693]
116836985  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
116837689  ADRM1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
116837704  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
116838303  PSMB5; LOW QUALITY PROTEIN: proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
116838305  PSMB11; LOW QUALITY PROTEIN: proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
116838405  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
116838554  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
116838921  PSMD8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
116839008  [KO:K06696]
116839010  PSME2; proteasome activator complex subunit 2 [KO:K06697]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
cabi04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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