Caproicibacterium amylolyticum: H6X83_07305
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Entry
H6X83_07305 CDS
T07171
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
caml
Caproicibacterium amylolyticum
Pathway
caml03030
DNA replication
caml03410
Base excision repair
caml03420
Nucleotide excision repair
caml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H6X83_07305 (ligA)
03410 Base excision repair
H6X83_07305 (ligA)
03420 Nucleotide excision repair
H6X83_07305 (ligA)
03430 Mismatch repair
H6X83_07305 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caml03032
]
H6X83_07305 (ligA)
03400 DNA repair and recombination proteins [BR:
caml03400
]
H6X83_07305 (ligA)
Enzymes [BR:
caml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H6X83_07305 (ligA)
DNA replication proteins [BR:
caml03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H6X83_07305 (ligA)
DNA repair and recombination proteins [BR:
caml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H6X83_07305 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H6X83_07305 (ligA)
MMR (mismatch excision repair)
DNA ligase
H6X83_07305 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H6X83_07305 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
RNA_ligase
BRCT_2
5_3_exonuc
Zn_ribbon_NUD
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QNO16787
UniProt:
A0A7G9WDM5
LinkDB
All DBs
Position
complement(1524411..1526405)
Genome browser
AA seq
664 aa
AA seq
DB search
MRGTILQQNEAKARAAQLREQIRYHNRKYYVEDAPEIDDFEYDMLYRELQNLEEQFPQLR
TADSPTQQVGGAPLAQFSKVRHEVVMESLHDSFSHAELRDFDRRVRETAADVTYVVEPKF
DGLSVSLEYRDGVFTRGSTRGDGTVGEDVTENLRTIRTIPKMLKRPVPFLEVRGEVYMSH
ESFFKLCAQQELAGEKAFKNPRNAAAGSLRQKDSRITAARVLDIFVFNVQQISGDTLHSH
DEALNYLKDLGFTVTPFFKTCQTIDEAIEEVERIGGLRGSLGYSIDGAVIKVNSFAQRQE
LGSTAKFPKWAEAFKYPPEEKETKLLNIEVNVGRTGVLTPTGVFEPVSLAGTTVSRATLH
NQDYITEKDIRVGDTVKLRKAGEIIPEVVSVVSHAEDSAPYQLPEVCPSCGSPVVREEGE
SAVRCTNAACPAQLARHLIHFVSRDAMGIDGCGPAVLEQLIAEKLVKSPADLYTLTLAQL
TLIERMGEKSAQNLLDGIERSKQNDLSHLLFAMGIPHIGQKAAKLLAARFGSMTNVFKAT
AEEIAEIDGYGEIMAESVQEFFSLTATAELVARLRDAGVNMESQQQVQDTRFSGKTFVLT
GTLPNMTRVQAAEVIEKFGGKVSGSVSKKTSYVLAGKEAGSKLTKAQTLGVPILSESDFE
ELLK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaactatattgcagcagaatgaagcaaaagcgcgcgccgcacaactgcgcgaa
cagattcggtatcacaaccggaaatactatgtggaagacgctccggaaatagacgatttt
gagtacgacatgctgtacagagaactgcagaatctggaagaacagtttccacagctgcgt
acagcagattcgcctacacagcaggttggcggcgcaccccttgcgcagttcagcaaagtg
cggcacgaagttgttatggaaagtctgcatgattccttttcccacgcggaactgcgtgac
tttgaccgccgcgttcgggaaacagcggcagatgtgacatatgttgttgagccgaagttc
gacggcctttccgtttcactggaataccgtgacggtgtttttacccgcggttcaacccgc
ggtgatggtaccgtcggcgaggatgttacagaaaatctgcgtaccatccgtacaattcct
aaaatgctgaagcgcccggtgccgtttctggaagtgcgcggagaagtttatatgtcacac
gaaagttttttcaagctgtgtgcgcagcaggagctcgccggtgaaaaagctttcaaaaat
ccacgcaacgctgccgccggttccctgcggcagaaagacagccgcataacggcagcccgc
gtgctggatatttttgtttttaatgtacagcagataagcggagacacactgcacagtcat
gatgaagcactgaattacctgaaagacttaggttttaccgtaacacctttctttaaaacc
tgccaaacgattgacgaagcaattgaggaagtggagcgtattggcggtctgcggggcagc
ttgggctactctatagacggtgcggtaattaaggtgaacagctttgcgcagcggcaggaa
ctgggcagtaccgcgaagttccccaaatgggcggaagcatttaaatatccgccggaagaa
aaagaaacgaagctgctgaatattgaggtgaatgtcggcagaaccggtgtgctgacaccg
accggcgtgtttgagccggtttcactggcaggtactaccgtcagccgtgcaacgctgcac
aatcaggattatatcacagaaaaagatattcgcgtcggtgatacggtaaaactgcgcaaa
gcgggtgaaatcattccggaagtggttagcgtggtttcccatgctgaagattctgctcca
tatcagctgccggaagtctgcccatcctgcggcagcccggttgtgcgggaggaaggggag
tcggctgtacgctgtaccaatgctgcctgccccgcacagcttgcccgtcacctgattcac
tttgtcagccgcgatgcaatgggcatcgacggctgcggccctgcagttttggaacagctg
attgcagagaaacttgtaaagtcgcctgcagatttatatactctgacgcttgcgcagctg
acactgatagagcgtatgggagaaaaatcagcgcaaaatctgctggacggtattgaacga
agcaaacaaaatgatctttcacaccttttgtttgctatgggcatcccacatatcggccag
aaagcagcaaaactactggcggcgcgtttcggcagcatgaccaacgtctttaaagctact
gcggaggaaattgccgaaatagacggctacggcgaaatcatggcggaaagcgttcaggag
tttttcagcctgactgctactgctgaactggtggcacgcctgcgcgatgctggtgtgaac
atggaaagtcagcagcaggtgcaggacacccgtttttccggaaagacttttgtattgacc
ggtactttgccgaacatgactcgtgtacaagcggcagaagtcatagaaaagttcggcgga
aaagtgagcggcagcgtcagcaaaaagacaagctatgtccttgccggaaaagaagccggc
agcaagctgacaaaagcgcagaccctcggtgtaccaatcctttcagaatcggactttgag
gaactgctgaagtaa
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integrated database retrieval system
