Chryseobacterium capnotolerans: H5J24_16870
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Entry
H5J24_16870 CDS
T08205
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccao
Chryseobacterium capnotolerans
Pathway
ccao03030
DNA replication
ccao03410
Base excision repair
ccao03420
Nucleotide excision repair
ccao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H5J24_16870 (ligA)
03410 Base excision repair
H5J24_16870 (ligA)
03420 Nucleotide excision repair
H5J24_16870 (ligA)
03430 Mismatch repair
H5J24_16870 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccao03032
]
H5J24_16870 (ligA)
03400 DNA repair and recombination proteins [BR:
ccao03400
]
H5J24_16870 (ligA)
Enzymes [BR:
ccao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H5J24_16870 (ligA)
DNA replication proteins [BR:
ccao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H5J24_16870 (ligA)
DNA repair and recombination proteins [BR:
ccao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H5J24_16870 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H5J24_16870 (ligA)
MMR (mismatch excision repair)
DNA ligase
H5J24_16870 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H5J24_16870 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_lig_T4_1
5_3_exonuc
zf-ribbon_3
UPF0758_N
BRCT_2
zf-IS66
A2L_zn_ribbon
Motif
Other DBs
NCBI-ProteinID:
UHO37378
LinkDB
All DBs
Position
3627382..3629388
Genome browser
AA seq
668 aa
AA seq
DB search
MSENIQQKIEQLRKELHQHNESYYLLDTPTITDYEFDMLLEQLQDLEAKHPEFYDENSPS
MRVGGGITKVFPTIQHKFRMYSLDNSYDFDDLEDWEKRIIKTIDDPVEFVAELKYDGASI
SILYENGKLTQAVTRGDGFQGDEITPNVRTISDIPLTLKGDFPSQFFMRGEIYLTRKNFD
KLNQLREEEGLDPFMNPRNTASGSLKMQDSAEVRKRSLSSVLYQYISDETPAETHWELLQ
KAQSWGFKTSQQAKLCKTLDEVKEFITFWDTERHNLPFEIDGIVLKVNSLQQQRQLGYTA
KSPRWAMAYKFKAEKVETELQSVSYQVGRTGAITPVANLKPVLLAGTIVKRASLHNEDII
KKLDLHENDFVYVEKGGEIIPKIVGVNTDKRTDESREIEYIKHCPECGTELVKIEDQAIH
FCPNELHCPPQVVGRMIHYVSRKALNIDNLGSETIEQLYREKLIENPADFYALTKEQLLP
LERMAEKSAQNIITGIEKSKEIPFEKVLYGIGIKHVGETVAKKLVKNFPTIEELKNASVE
ELCQVEDIGTKIALSIEEFFKNTENLLMIERLKSYGVQLEKGESTNEVLSNVLEGKTFLF
TGKLSLFTREAAEEMVENHGGKNISAVSKNLNYLVVGEKAGSKLKKAQDIGTIEILDEQQ
FLDLIEKQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacattcaacaaaaaatagaacagctccgcaaagagctgcaccagcataac
gaaagctactaccttctggatactcctaccattacagattacgaatttgacatgttactg
gagcaacttcaggatctggaagccaagcaccctgagttttatgatgaaaactcaccttca
atgcgtgtaggaggcggcattacaaaggtattccctaccatccagcacaaattcagaatg
tactctctggataattcttatgattttgatgatctggaagactgggaaaaaaggattatt
aaaactattgatgaccctgtagaatttgtagctgaattaaagtatgacggagcatctatc
tccattctttatgaaaacgggaaacttacccaagctgtaactcgtggtgatggttttcaa
ggagatgaaatcactccgaacgtacgtaccatctcggatattccattgacgttaaaaggg
gacttcccttcgcaattctttatgcgcggtgagatttatttaacgagaaagaattttgat
aagcttaatcaacttcgtgaagaggaaggattagatccattcatgaatcctagaaataca
gcaagtggaagtttaaaaatgcaggatagtgctgaggtaagaaaacgttctctttcttct
gtattatatcagtatatttctgatgaaactcctgcggaaactcattgggaattattgcaa
aaggcacaaagctgggggttcaaaacctcacaacaggcaaaactttgtaaaaccctggat
gaggtaaaggaattcatcactttctgggacacggagcgtcataatctgccatttgaaatt
gatggaattgtattaaaggttaattctttacaacaacaaagacagcttggatatactgcc
aaatctccgcgttgggctatggcttataaatttaaggctgaaaaggtagaaaccgagctt
caaagcgtttcttaccaggtaggaagaaccggagcgattactcctgtggctaacttaaaa
cctgttttattagcaggaacgattgtcaaaagagcctctttacataatgaagatatcatc
aagaaacttgatcttcatgaaaatgattttgtctatgtagaaaaaggaggggaaattatt
ccgaagatcgttggggtaaatacggataaaagaactgatgaaagcagagaaatagaatat
attaaacactgcccggaatgtggaactgaactggtaaaaattgaggaccaggctatccat
ttctgtccaaacgaacttcattgcccgccacaggttgtaggaagaatgattcactacgtt
tccagaaaggctttaaatattgataatctcgggagtgaaaccatcgaacagctttacaga
gaaaaactgattgaaaatcctgctgatttctatgctttaactaaagaacagcttctccca
ttggaaagaatggcggagaaatctgctcagaatatcattacaggaattgaaaaatctaag
gaaattccatttgaaaaggtattgtacggaattgggatcaagcatgtaggagaaacagtt
gctaaaaaactggtgaaaaacttccctacgattgaggaattaaagaatgcttctgtagaa
gaactttgccaggtagaagacatcggaactaaaatcgctttaagtattgaagagtttttc
aaaaacactgaaaacctattgatgattgagcgcctgaaatcttacggagtacagcttgaa
aaaggagaaagcaccaatgaagtattatctaatgttttagaaggaaagactttccttttc
actggtaaattatccctatttaccagagaagcagctgaagaaatggtagagaatcatggt
ggaaagaatatttctgccgtttctaaaaaccttaactatcttgtggttggggaaaaagca
ggaagcaagctgaaaaaagctcaggatatcggaacaattgaaattttggatgagcaacag
tttctggatttgattgagaaacagtaa
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integrated database retrieval system
