Corynebacterium casei: CCASEI_08490
Help
Entry
CCASEI_08490 CDS
T03041
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ccg
Corynebacterium casei
Pathway
ccg03030
DNA replication
ccg03410
Base excision repair
ccg03420
Nucleotide excision repair
ccg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ccg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCASEI_08490 (ligA)
03410 Base excision repair
CCASEI_08490 (ligA)
03420 Nucleotide excision repair
CCASEI_08490 (ligA)
03430 Mismatch repair
CCASEI_08490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ccg03032
]
CCASEI_08490 (ligA)
03400 DNA repair and recombination proteins [BR:
ccg03400
]
CCASEI_08490 (ligA)
Enzymes [BR:
ccg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCASEI_08490 (ligA)
DNA replication proteins [BR:
ccg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCASEI_08490 (ligA)
DNA repair and recombination proteins [BR:
ccg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCASEI_08490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCASEI_08490 (ligA)
MMR (mismatch excision repair)
DNA ligase
CCASEI_08490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCASEI_08490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AHI20261
LinkDB
All DBs
Position
complement(1845911..1848001)
Genome browser
AA seq
696 aa
AA seq
DB search
MSATESFDQLNPEEAQKRWAELAQEVRRHRELYYNEQPAIPDADFDAMFQELVALESAHP
QLVVPESPTQEVGSAPAADSAFADIEHLERLMSLDNVFNSDELQDWLDRTPAKAYLAELK
IDGASIDLVYRDGELVTAATRGDGRVGEDITANAKVIESIPHKLQGSDEYPVPTLVEIRG
EIYMRPEDFETLNEERAAEGKQAFANPRNSAAGGLRMKNPDDVKKRRLRLVAHGIGAREG
FSPASQHDAYAAIAAWGLPVSPYTERVTTSKEVQDKVKYWADHRHDAEFEMDGVVIKVDD
LGSQRGLGATSRAPRWAIAYKYPPEEVTTKLVNIEVGVGRTGRVTPYAVMDPVFVSGSTV
SMATLHNQSEVKRKGVLIGDTVIIRKAGEIIPEVLGPVLEKRDGSETEWVFPENCPSCGT
KLAPQKEGDADWRCPNTRTCPAQLSARLEYLAGRGAFDIEALGEKGAIDLIERGVLEDES
DLFDLTEELLTKSDVYTTKAGKVNASGKKLLSNLETARNTDLWRVLVALSIRHVGPTAAR
AIATRYGSLEAARSADVEDIAQTDGVGQIIAESFKEWFEVDWHRTIVEKWAAAGVTMAVD
ESEKQEQTLEGLTIVVTGTLENFSRDSAKEAIITRGGKASGSVSKKTDYVVAGENAGSKG
TKARDLGVTILNEAGFQTLLDTGAAEAAPSPEGAEE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgctactgaatcatttgaccagctaaacccggaggaagcgcagaagcggtgggca
gaacttgcccaagaagtccgacgccatcgagagctgtactacaacgagcagccagcgatt
cctgacgccgatttcgatgccatgttccaggagcttgttgcgctggagtctgcacatccg
cagttggtagttccagagtccccaacccaggaggtgggctcggcgccggctgctgattca
gcattcgctgatattgagcaccttgagcgtttgatgagtttggacaatgtctttaactca
gatgagctgcaagactggctggatcgcacgccggcgaaggcttatttggctgagctcaag
attgacggcgcgtccattgacttggtctaccgcgatggtgaattggttacggccgccacg
cgtggtgatggccgcgtgggcgaggacatcaccgctaatgccaaggtgattgaatccatt
ccgcacaagctgcaaggctccgatgaatatccggtaccaacgctggtggaaattcgcggc
gagatttacatgcgccctgaggattttgaaaccctcaacgaagagcgcgccgctgaaggc
aagcaagcttttgccaatccccgaaactccgccgcgggtggtctgcgtatgaagaatcca
gatgatgtgaaaaagcgtcgcctgcgccttgttgctcacggcattggtgcccgcgagggc
tttagccctgccagccagcatgatgcctatgcagccatcgcagcctggggactgccggtc
tctccgtacacggaacgagtaaccacctcgaaggaagtccaagataaggtcaagtactgg
gcggatcatcgccacgatgccgaatttgagatggacggagtggtcatcaaggtagatgac
ttgggctcacagcgcggcctgggtgctacctcgcgcgcgccgaggtgggcaattgcctat
aagtacccgccggaggaagtcaccaccaagctggtcaacatcgaagttggtgtgggtcgc
acgggacgtgtgactccttatgccgtgatggatccggtcttcgtatctggttctacggtg
tctatggcaacgctgcacaatcagtctgaggtcaagcgcaagggcgtgttgattggggat
accgtcattatccgcaaggccggcgaaatcatccctgaggtcttaggtccggtgctggaa
aagcgtgacggctcagagaccgagtgggttttcccggagaactgtccatcgtgtggcaca
aagcttgcgccgcaaaaggaaggcgatgccgactggcgatgtcccaatacccgtacttgc
ccggcacagctttcagcgcgcctggagtacctcgcgggccgtggtgctttcgatatcgaa
gcactcggtgaaaagggagccattgaccttattgagcgcggcgtactggaagatgaatcg
gacctcttcgacctgaccgaggagcttctgaccaagtccgatgtgtacaccacgaaggct
ggcaaggttaatgcctcaggtaagaagcttctatcgaacctggagacggcaagaaacacc
gacctgtggcgcgtgctggttgcactgtctattcgccatgtcggcccgactgccgcgcgc
gcaattgcgacccgctatggctcgctggaagccgcacggtcagccgatgtggaagacatc
gcgcagacagacggagtgggccaaatcattgccgagagttttaaggaatggttcgaggtg
gattggcaccgcaccatcgtggagaagtgggcggccgctggtgtcaccatggctgtcgat
gaatccgagaagcaagagcaaaccctcgaaggcctgaccatcgtggtcaccggcactttg
gagaacttttcccgcgatagcgccaaggaagcaatcatcacccgcggcggcaaggcttcc
ggttctgtatcgaagaagaccgactatgttgtcgcaggcgagaacgcaggttccaaggga
accaaagcccgcgacctcggcgtcaccatcctgaacgaagccggattccaaactcttctc
gacaccggcgctgccgaagccgcgccaagcccagaaggtgccgaagagtag
DBGET
integrated database retrieval system
