Coregonus clupeaformis (lake whitefish): 121586209
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Entry
121586209 CDS
T08357
Name
(RefSeq) complement C1r-A subcomponent-like
KO
K01330
complement component 1, r subcomponent [EC:
3.4.21.41
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121586209
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cclu01002
]
121586209
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121586209
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.21 Serine endopeptidases
3.4.21.41 complement subcomponent C_overbar_1r_
121586209
Peptidases and inhibitors [BR:
cclu01002
]
Serine peptidases
Family S1: chymotrypsin family
121586209
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Phagocytosis
Opsonins
121586209
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Trypsin
CUB
Sushi
FXa_inhibition
EGF_CA
cEGF
EGF_3
CDCP1_CUB_6
EGF
Trypsin_2
DUF4215
Motif
Other DBs
NCBI-GeneID:
121586209
NCBI-ProteinID:
XP_041758667
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Position
29:complement(54000796..54006317)
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AA seq
707 aa
AA seq
DB search
MDWTHPFIWLLCVSVCECWRLARSLPALHGEVQSPQFPQPYPAALSQQWDLSVPEGYQLQ
LSFTQLDIEPSANCYYDSLTVLYDKKVLAKFCGQENSADGHHPGNQPLLSPGNRLTLVFQ
TDDTNPEPHQHLGFSAHYQAKDIDECSAPDPEDGSGPLCSQFCHNTLGSYMCSCRHGYEL
RPDQRTCVLSCGGGIFDEPEGTLSSPGYPDPSPHGLACQYVISVEPGFIVTLNFTDSFHI
EHIGTQNVPSCLYHWLQVSIPDKEPQKLCGGKSPGLMPTNSHTVQLDYHTDWAGLSQGWS
LHYTTQRVQCASPSYVTNGRVTPNFLQYYYRDYIQVRCDSGYKLIMDGREIKSYASMCQN
NGKWHLSLPECHIIDCGEPEALLNGGVKFISGSQNQYLSVIQYHCNEPFYSLLGGATVSY
TCAADRKWRDNLDTHVIPSCIPVCGQPTEPISGFQRIMGGDKAPDKTIPWQVMLSVDGSR
GGAIVIGDRWIMTAAHNLVQQGTPVLKEKLRVFVGDNDAEKLAKLTPLGVASLHPHPEYN
NPDDANYNHDIALIKLQQSLTFHAAIMPLCLPPEGATYTSGQIGMVSGFGIKEHDIIANE
LRYIRLPVVGEDKCQDSVKKAKAATPITRIPLLTDNMFCAGVPEGGKDSCMGDSGGAYVL
KDDSTKRFWAAGIVSWGVGCGQSGRYGVYTRVAKYIGWINKTMEDNK
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggactggacccatccgttcatctggctgctttgtgtctctgtgtgtgagtgttggcgg
ttggcccggtccctgccagccctacatggggaggtccagtccccccagttcccccagcca
taccctgctgccttgtcacaacagtgggacctcagtgtacctgagggctaccagctccag
ctcagcttcactcaactggacatcgagccttccgccaactgttactacgactcactcacg
gttttatatgacaagaaggtccttgcaaagttctgtggtcaggagaattctgctgatgga
catcacccaggcaaccagccactcttgtctccaggcaacaggctcaccctggtctttcag
acagacgacacgaaccctgagccacaccagcaccttggcttctccgcccactatcaggcc
aaagacatagatgagtgttcagctccagaccctgaggatggttctggtccactctgctcc
cagttctgccacaacaccctgggctcctacatgtgctcctgtcgccatggctacgagctc
cgccctgaccagcgcacttgtgtcttgtcctgtggtgggggtatatttgatgaaccagag
gggactctgtccagcccggggtaccctgacccgtcaccccacggcctggcctgtcagtac
gtcatctctgtggagcctgggttcatcgtcaccctcaacttcactgacagcttccacata
gagcacataggcacccagaatgtacccagctgcctctaccactggctacaggtgtccatc
ccagacaaggaaccccagaagctgtgtggagggaagagtcctggactaatgcccactaac
tctcacactgtccagctagactaccacacagactgggctggtctgagccagggctggagc
ctccactacactactcagagggtgcagtgtgcttcacccagttatgtcaccaatggaaga
gtcaccccaaactttctccagtactattaccgagactacatccaagtccgctgtgactct
ggctacaaactaattatggatggcagagagatcaagagctatgcctccatgtgtcaaaat
aatggaaagtggcacctctccctccctgagtgccacataattgactgtggggaacctgaa
gcattgttgaatggaggggtaaagttcatatctggctctcagaaccagtacctctccgtc
attcagtaccactgcaatgaacctttctactcactccttggaggagcaactgtgagctac
acttgtgcagcagatagaaagtggagagacaaccttgatacccatgtcattccctcatgt
atcccagtctgtggccagcccacggagcccatctcaggctttcagaggatcatgggggga
gacaaagccccagacaaaaccataccctggcaggtgatgctcagtgtggatggaagcaga
ggaggggccattgtgatcggggaccgctggatcatgactgcagctcataacctggtgcaa
cagggcacacctgtgctaaaggagaaacttcgggtttttgtgggagacaatgatgcagaa
aaactagcaaagctcacccctcttggtgtcgcctctctccacccccaccctgaatacaat
aacccagatgatgcaaactacaatcatgacattgccctgataaaactccaacaatcactc
acattccacgctgccattatgccattgtgtctgccaccagagggcgctacatacaccagt
ggccagattggtatggtgtcaggctttggcattaaagaacatgacatcattgccaacgag
ctcaggtatatacgcctaccagtagtgggtgaggataagtgccaagactctgtcaaaaaa
gcaaaagcagcaacgccaataacgaggatccctcttctgacagacaacatgttctgtgcc
ggagtacctgaggggggcaaggactcctgtatgggggacagtggaggggcgtatgtcttg
aaggatgatagtactaaacgtttttgggctgcaggtattgtcagttggggtgtgggttgt
ggtcagagtggtagatatggagtgtacacccgtgtggctaaatacattggctggatcaac
aaaaccatggaggacaataagtaa
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