KEGG   PATHWAY: cfar00920
Entry
cfar00920                   Pathway                                
Name
Sulfur metabolism - Citrobacter farmeri
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
cfar00920  Sulfur metabolism
cfar00920

Module
cfar_M00021  Cysteine biosynthesis, serine => cysteine [PATH:cfar00920]
cfar_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:cfar00920]
Other DBs
GO: 0006790
Organism
Citrobacter farmeri [GN:cfar]
Gene
CI104_18185  sulfate ABC transporter substrate-binding protein [KO:K02048]
CI104_24205  sulfate ABC transporter substrate-binding protein [KO:K23163]
CI104_18180  cysT; sulfate/thiosulfate ABC transporter permease CysT [KO:K02046]
CI104_18175  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
CI104_18170  sulfate/thiosulfate ABC transporter ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
CI104_05975  taurine ABC transporter substrate-binding protein [KO:K15551]
CI104_20835  taurine ABC transporter substrate-binding protein [KO:K15551]
CI104_05985  taurine transporter subunit [KO:K15552]
CI104_20830  ABC transporter permease [KO:K15552]
CI104_05980  tauB; taurine transporter ATP-binding subunit [KO:K10831] [EC:7.6.2.7]
CI104_05990  taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
CI104_09180  aliphatic sulfonate ABC transporter substrate-binding protein [KO:K15553]
CI104_09170  ssuC; alkanesulfonate transporter permease subunit [KO:K15554]
CI104_09165  aliphatic sulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
CI104_09175  ssuD; alkanesulfonate monooxygenase, FMNH(2)-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
CI104_09185  NAD(P)H-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
CI104_19970  sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
CI104_19975  sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
CI104_19965  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
CI104_22355  3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
CI104_19990  cysH; phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
CI104_20000  NADPH-dependent assimilatory sulfite reductase flavoprotein subunit [KO:K00380] [EC:1.8.1.2]
CI104_19995  cysI; NADPH-dependent assimilatory sulfite reductase hemoprotein subunit [KO:K00381] [EC:1.8.1.2]
CI104_12205  tetrathionate reductase subunit TtrA [KO:K08357]
CI104_12215  tetrathionate reductase subunit TtrB [KO:K08358]
CI104_12210  tetrathionate reductase subunit TtrC [KO:K08359]
CI104_12255  thiosulfate reductase cytochrome B subunit [KO:K08354]
CI104_18575  3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
CI104_01600  thiosulfate sulfurtransferase GlpE [KO:K02439] [EC:2.8.1.1]
CI104_00670  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
CI104_06470  cysteine synthase [KO:K01738] [EC:2.5.1.47]
CI104_18120  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
CI104_23625  homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
CI104_24060  cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
CI104_08940  dimethyl sulfoxide reductase subunit A [KO:K07306] [EC:1.8.5.3]
CI104_22940  dimethyl sulfoxide reductase subunit A [KO:K07306] [EC:1.8.5.3]
CI104_08945  dmsB; dimethylsulfoxide reductase, chain B [KO:K07307]
CI104_22935  dmsB; dimethylsulfoxide reductase, chain B [KO:K07307]
CI104_12715  dmsB; dimethylsulfoxide reductase, chain B [KO:K07307]
CI104_08950  dimethyl sulfoxide reductase anchor subunit [KO:K07308]
CI104_22930  dimethyl sulfoxide reductase [KO:K07308]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
cfar00260  Glycine, serine and threonine metabolism
cfar00270  Cysteine and methionine metabolism
cfar00680  Methane metabolism
cfar00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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