Clupea harengus (Atlantic herring): 105889114
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Entry
105889114 CDS
T09045
Symbol
fbn1
Name
(RefSeq) fibrillin-1
KO
K06825
fibrillin 1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04350
TGF-beta signaling pathway
char04518
Integrin signaling
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
105889114 (fbn1)
09133 Signaling molecules and interaction
04518 Integrin signaling
105889114 (fbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105889114 (fbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
char00536
]
105889114 (fbn1)
Glycosaminoglycan binding proteins [BR:
char00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105889114 (fbn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_CA
cEGF
hEGF
EGF
FXa_inhibition
TB
EGF_3
Fibrillin_U_N
Plasmod_Pvs28
EGF_FBN_1st
EGF_PEAR1L
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
105889114
NCBI-ProteinID:
XP_012670335
Ensembl:
ENSCHAG00000026378
UniProt:
A0A6P3VF43
LinkDB
All DBs
Position
6
Genome browser
AA seq
2900 aa
AA seq
DB search
MWQGWLLKFTLGLAAVLSVTIDAEEVGTLESKAGKSGEPRANRSKRRGGGQDVLKGPNVC
GSRFNSYCCPGWKTLSGGNQCIVPICRSSCGDGFCSRPNMCTCPTGQISPSCGSKSVQHC
NIRCMNGGTCAEDNCQCQKGYNGAHCGQPVCENGCQNGGRCVAPNRCVCTYGFTGAQCER
DYRTGPCFASVTNQMCQGQLSGIVCTKTLCCATVGRAWGHPCEMCPAQPHPCRRGFIPNH
RTGACQDVDECQAIPGLCQGGTCINTVGSFECRCPAGHKFNEISQKCDDRDECASIPGLC
SGGECSNTIGSYFCRCPQGYDTAVDGSRCIDARGGFCYASMVNGRCVNPNQQPMTKYQCC
CDSGRCWSSTATPEMCPMRGTDEYLRLCTQTSVVGPGSEFPGGPGPVYPGGPGPVFPGGP
IIQPPLISGPPIPGRPDTYPPVPGQTVPGRGDPYDPRIPAVVATQNLTSMCKLYLNLCLN
GRCVPTPGSYRCECNMGFRLDSRGECIDDDECERSPCVHGECVNTAGSYFCKCPPGFQTT
ATRTECKDLDECVANGRICNNGRCVNTVGSFNCVCNAGFELTLDGKNCQDQDECLRNICQ
NGMCMNEEGSFKCICKPGFYLDPTGRFCLDINECETPGMCMNGRCVNTEGSFRCECMPGL
AVGLDGRVCVDTHMRSTCYGGYKRGQCVRPFLGAVTKSECCCSNQNYAFGEPCQPCPPQS
SAEFLALCSHGPGTTTDGRDINECALDPDICQNGVCENMLRTYKCNCNLGFEVDSTGKQC
VDIDECAVNRLLCDNGLCRNTPGSFTCQCPKGFLFDPETDVCEDIDECESSPCVNGGCKN
SPGSFLCECSVGSTLDSSGTQCIETSKGRCWMKVVNGRCEININGATLKSHCCSTLGEAW
GSPCTKCEPDPFCTKGFARVKGSVCEDVNECEVFPGVCINGKCVNTVGSFICQCPSGMTV
DAAGRTCIDLRTEQCYLSHEDERCGAPIPGRHRVDGCCCSVGVAWGPECDECPEKGSKEY
NLLCPRGPGFSHRGDFINGKPFLKDINECKMIHSLCTNGRCRNTIGSFRCRCDNGFALDS
DERNCTDIDECRISPDLCGHGSCVNTAGDFECECFEGYESGFMMMKNCMDIDECERNPLL
CRGGDCVNNEGSFQCLCPDGHSIAPDGSACLDINECELSDRLCKNGQCVNMIGRYQCSCD
TGYKSTEDRLSCIDIDECTIQNGGCETFCTNSEGSYECSCRSGYALMPDLRSCTDIDECE
ENPNICDGGQCTNIPGEYQCLCFDGFMSSEDMKTCLDVDECELNPNICLSGKCENSRGSF
ICHCDLGYSVRKGTTGCTDINECEIGAHNCDRHAACTNTAGSFKCSCAPGWIGDGVKCTD
LDECSNGTHMCSHNADCMNTMGSYRCVCKDGFAGDGYYCSDSDECADNVNLCESGHCLNV
PGGYRCECDMGFYATPDGKACDDVDECTFSNVCINGRCQNMPGLFRCECHIGYELDRSGG
NCTDLNECADPTICISGHCVNTPGSYVCNCPPFFELNPSGVGCVDTRSGNCYLDVQSRGD
ASESLSCSNEIGQGVSKASCCCSQGRAWGTPCEECPSLNSSEYKTLCPGGEGFRPNPITV
ILEDINECLELPGLCQGGNCINTFGSFQCECQKGFALNEDTRVCEDVNECERPGICGPGQ
CYNTIGNYTCICPPDYMQVNGGNNCMDMRKSLCFRNFYSDNGTCDGELNFNVTKKMCCCS
YNIGRAWNKPCEQCPVPSTTEFAILCGSERPGYYIDIYTGQVIDIDECREIAGLCENGVC
INMIGSFRCECPMGFVYNDKLLICEDIDECQNGPVCQQNAACQNLPGSFRCECKPGYRFT
STGQCLDRNECIENPNVCHPGQCIDTVGSYRCLCPNGYKSTLDQSMCIDVDECERQPCGN
GTCKNTLGSYNCICYPGFEHSHNNDCIDQDECATQRGLCRNGNCLNTVGSFVCVCRDGYE
LTSDGRMCVDINECADNPGTCGPGTCQNLDGSYRCICPNGYYVVDEKCEDIDECTQSPDI
CISGTCTNTPGGFKCDCPEGYQLTSSGRRCLDMRIHYCYTKFENGRCLAPKHLNTTKGSC
CCSAMPGQGWGDPCEICPSMGEEAFTVLCHNVGQTFGHDDKPIDIDECSTNPNACTNGEC
INTDGSYRCQCPFGFRLDTTGINCEDINECDLGNPCGNGTCTNVIGAFECTCDEGFEPGP
MMSCEDVNECALNSLLCAFRCVNTHGSYECKCPTGYVLREDRRMCKDQNECEDGIDDCES
RGMTCKNLIGTYMCICAPGFMRMPNGEGCMDLNECSTKPGICQNGRCENTVGSYRCKCDQ
GFNPSPTQTDCIDNRQGFCFTEVLQTLCQMTSSSRNSVTKSECCCDGGRGWGPTCELCPL
PGTTQYKRMCPLGPGYTTDGKDIDECKVMGNLCKNGQCINTLGSYNCVCKPGYTPDIIGT
LCIDVDECSQAPKPCNFICKNTEGSYLCSCPRGYILQEDGKSCKDLDECQTKQHNCQFLC
VNTIGGFTCKCPPGFTQHHTACIDNNECSADPALCGGNGVCQNSPGSFNCECQRGFSLDH
NGQSCEDMDECDGNHRCQHGCQNLVGGYRCSCPQGYLQHYQWNQCVDENECQNSQVCGSA
SCHNTLGSFRCICPNGFNFEQMSGGCADVNECSHTQNPCNYGCANTDGGYLCGCPPGYFR
AGQGHCVSGVGFGAGVPLGGQGHGHGGEGEGEGDDNSLSPEACYECKINGYPKKGRKRRS
TNGTLDEALGDSQNEQETISLDSVDTEDTLLFNLNISDVKSKDHILEFIPALSTLNNHVR
YTIDFGNDEGLFKINQKEGISYLHLAKKKALVPGAFFLQVSSVPLFKKKELAQLEDRHDK
DYLTGQLGDTLKMKVQIVFH
NT seq
8703 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaggggtggctgctgaagtttaccctgggacttgcagcggtcttgtcggttaca
atcgatgccgaagaggttggcactttagaaagcaaggctggtaaatccggtgagccaaga
gccaacaggtcgaagcggagaggcggaggtcaagatgttctcaaggggccaaatgtgtgt
ggatcacgtttcaactcttactgttgccctgggtggaagacccttagtggaggaaaccag
tgcattgttcccatttgcagaagctcctgtggagatgggttctgctccaggcccaacatg
tgcacctgtccaacgggccagatctccccatcctgtggctccaaatcagttcaacactgc
aacatccgctgcatgaatggagggacctgtgcagaggataactgccaatgccagaaaggc
tacaatggagctcactgcggtcaacccgtttgtgagaatggatgtcaaaatgggggccgg
tgtgtggctccaaaccgctgtgtttgcacctacggtttcacaggagcccagtgtgaaaga
gattacagaactgggccctgctttgcctccgtcaccaaccagatgtgccagggccagctt
agtggcatcgtctgcaccaagaccctgtgctgtgccaccgtgggtcgcgcctgggggcac
ccctgcgagatgtgcccggcccagccccacccctgtcgccgcggcttcattccgaaccac
cggacgggcgcttgtcaagatgtggacgaatgccaggccatccctggactctgtcaagga
ggaacttgtataaacacagtgggatcctttgaatgcagatgccctgccggacacaagttc
aacgaaatcagccagaaatgcgacgaccgtgacgagtgtgccagcatccctggtttatgc
agcggcggcgaatgttctaacaccatcggcagctacttctgcagatgcccacagggctac
gacacagcagtggatgggtctcgatgcatagatgcccgcggaggcttctgctacgccagc
atggtgaacggccgctgtgtcaaccccaaccagcagcccatgaccaagtaccaatgctgc
tgtgacagcgggcgctgctggtccagcacggccactccagagatgtgccctatgcggggg
acagatgagtacctgcggctgtgcacccaaacctcagttgttggcccaggttctgaattc
cctggtggtccaggtcctgtataccccggtggtccaggtcctgtattccctggtggtcca
atcatccagccgccactcatctctggtccacctatccccggtcgtcctgatacctacccc
cccgtacctggtcaaactgttcctggtagaggtgatccatacgacccacgcattcccgct
gtcgtcgcgacccagaacctcaccagcatgtgtaagctgtatctcaatctctgtctgaac
gggcgctgtgttccaacccctgggagctaccgctgtgaatgcaacatgggcttccgtctg
gactcccgtggagagtgcatcgacgatgacgagtgtgagaggagtccgtgtgtgcatggc
gagtgtgtgaacacggcaggctcctacttctgtaagtgcccaccaggcttccagaccaca
gcaaccaggactgagtgcaaagatctggatgagtgtgtggccaatggacgcatatgcaat
aatggccgctgcgtcaacaccgtgggcagtttcaactgtgtgtgcaatgctggctttgag
ctcacactagatggaaagaactgccaagaccaggatgagtgcctgaggaacatctgccaa
aacggcatgtgcatgaatgaggaaggcagcttcaagtgcatctgcaagcctggcttctac
ctggaccccaccggacgcttctgcctggacattaatgagtgtgaaactcctggaatgtgc
atgaacggccgctgtgtgaacaccgagggctcctttaggtgcgagtgtatgccaggcctg
gcagtgggtctggatgggcgtgtgtgcgtagacacacacatgcgcagcacatgctacgga
gggtacaagcggggacagtgtgtccggcccttcctcggcgccgtcaccaagtccgagtgc
tgctgttccaaccagaactatgcctttggggagccctgccagccgtgcccacctcagagc
tcagcggagttcctggccctgtgcagccacggccctggcaccaccactgacggcagagat
attaatgagtgtgcgcttgaccctgatatttgccaaaatggagtttgtgagaacatgctg
aggacatacaaatgtaactgtaatttgggattcgaggtggattctactggcaaacaatgc
gttgacattgatgagtgtgctgtgaacagacttctgtgtgacaacgggctgtgcaggaac
actccaggcagcttcacctgtcagtgccccaagggctttcttttcgaccctgagacagac
gtgtgtgaagacattgacgagtgtgaatcgagtccttgtgtgaacggcggctgcaagaac
agccccgggtccttcttgtgcgagtgctcagttggcagcacgctggacagctctggaacg
cagtgcattgagaccagcaaaggaagatgttggatgaaggtagtgaatggccgctgtgag
atcaacattaatggagccaccttgaagtcccactgctgttccacgcttggcgaggcttgg
ggcagtccctgtaccaagtgtgagccagatccattctgcacaaaagggtttgccagagtt
aagggatcagtatgtgaagatgtgaatgagtgtgaagtgttcccgggcgtttgcatcaat
ggcaagtgtgtgaacacggtgggatctttcatctgccagtgccccagtggcatgaccgtg
gacgcggctgggagaacctgcattgacttgcggactgagcagtgctacctctcccacgag
gacgagcgctgcggagctcccattcccggacggcaccgcgtggacggctgctgctgctct
gtgggcgtagcctggggccctgagtgtgacgagtgcccagagaagggcagcaaggagtac
aacctgctgtgcccacgcgggccgggcttctcccacaggggagacttcatcaacggaaag
cccttcctcaaagatatcaacgaatgcaaaatgattcacagtctgtgcaccaacggccgc
tgcagaaacaccattggcagtttccgctgcaggtgcgataatggatttgccttggactcc
gatgaaaggaactgcacagatatcgatgagtgccggatctcccctgatctctgcggtcac
ggctcgtgtgtgaacacggcgggagactttgagtgcgagtgcttcgagggctacgagagc
ggcttcatgatgatgaagaactgcatggacatcgacgagtgtgagcggaaccctctgctg
tgccgtggcggcgattgcgtcaacaacgagggcagcttccagtgcctgtgtccggacggc
cactctattgccccagatggctccgcctgtctagacattaacgagtgtgaactgagtgac
aggctctgtaaaaacggccagtgtgttaacatgatcggacgctaccagtgttcctgtgac
accggatacaaatccacggaggacaggctttcttgtatagacatcgacgagtgcaccatc
cagaatggcggctgtgagacgttttgcaccaactcggagggcagctacgagtgtagctgc
cgcagtggctacgccctcatgcctgacttgcgcagctgcacagacattgacgagtgtgag
gagaatccaaatatatgtgatgggggccagtgcacaaacatcccgggtgaataccagtgt
ctgtgcttcgacgggttcatgtcctctgaagatatgaagacatgcctggatgttgatgag
tgtgagctcaacccaaacatctgcctgagcgggaaatgcgagaacagcagaggctccttc
atctgccactgcgacttgggctactccgtcaggaagggcaccaccggctgcacagatatc
aacgaatgtgagattggcgcccacaactgcgacagacatgccgcgtgcaccaatacagca
ggcagcttcaagtgcagctgtgccccgggctggattggtgacggggtgaagtgtacagat
ctggatgagtgctccaacggcacccacatgtgtagccacaacgctgactgcatgaacacc
atgggttcctaccgctgcgtctgcaaggacggcttcgccggcgacggctattactgctca
gatagtgacgagtgtgcagataatgtgaacctgtgcgagagcggccactgcttaaacgtt
cccgggggctaccgttgtgagtgtgacatgggattctatgctacccctgacggcaaagcc
tgcgatgacgtagacgagtgcaccttctcaaacgtctgcatcaacggaaggtgccagaac
atgccgggcctgttccgatgtgaatgtcacattgggtacgagttggacagaagtggtggc
aactgcacagatctcaacgagtgtgctgatcctaccatttgcatcagtgggcactgtgtt
aatacacctggcagctatgtgtgcaactgcccaccgttctttgagctcaacccatcaggg
gttggctgcgtggatacacgatctggcaactgttacctggacgtgcagtcccgcggcgac
gcgtcagagagcctaagctgctccaacgaaattggccagggggtgtccaaggcctcctgc
tgctgctcccagggccgggcgtgggggacgccctgtgaggaatgcccctcgctcaactcc
tcggagtataaaaccctgtgtcctggaggagagggcttccggccgaaccccatcactgtc
atcctggaggacatcaacgagtgtctggagcttcctggtttgtgccaaggaggaaattgc
attaatacatttgggagctttcagtgtgaatgtcaaaagggctttgcattgaacgaagac
accagggtctgtgaagatgtgaatgagtgcgagcgtcccggaatctgcggtcccggtcag
tgctacaacaccatcggcaactacacctgcatctgtccaccagattacatgcaagtcaat
ggtggcaacaactgcatggacatgaggaagagcctttgcttcaggaatttctattcagac
aatggcacttgtgatggagagctcaacttcaacgtgactaagaagatgtgctgctgctca
tacaacatcggccgagcctggaacaagccctgtgaacagtgtcccgtgccaagcacaact
gaatttgccatcctgtgtggcagtgaaagacccggatattacattgacatatacactggg
caggtcattgacatcgatgagtgcagggagattgctggtctgtgtgagaatggagtgtgc
atcaacatgatcggaagcttccggtgcgagtgccccatgggatttgtgtacaatgacaag
ctgctcatctgtgaagacattgatgagtgccagaatggaccagtgtgccagcagaatgct
gcttgtcagaacctgcctggaagtttccgctgtgagtgcaagcctggctaccgcttcact
tccacaggacagtgcctggatcgtaatgagtgtattgagaatcccaatgtctgccaccct
ggacagtgcattgacaccgtggggagctaccgttgcctatgccccaatgggtataaatcc
accttggaccaatccatgtgtatagatgtggatgaatgcgagaggcagccgtgtggcaat
ggaacatgcaagaacacactgggctcgtacaattgtatctgctaccctgggttcgagcac
tcccacaacaacgactgcattgaccaggacgaatgcgccacgcagagaggcctgtgccgc
aacggaaactgcctgaacacggtgggctccttcgtgtgtgtgtgccgggacggctacgag
ctcacatcagatgggaggatgtgtgtggacatcaatgagtgtgccgacaaccctggaacg
tgcggccccggaacctgccagaacctggacggctcctacaggtgcatctgtcctaatggg
tactacgtcgtggacgagaagtgtgaagatattgatgagtgcacacagagcccagatatc
tgcatctctggcacctgcaccaacactccagggggcttcaaatgtgactgtcccgagggc
taccagctgacctcgtctggacggaggtgcctggatatgcgtatccattactgctacacc
aagtttgagaatggacgctgcctggcaccgaagcacctcaacaccaccaaggggagctgc
tgctgcagtgcaatgccaggccagggctggggcgacccctgtgagatctgccccagcatg
ggcgaggaggcatttacagtactgtgccacaatgttggccagacctttggacacgatgac
aagcctattgacattgatgagtgctccaccaacccaaatgcctgcactaacggagagtgc
atcaacacggacggatcctaccgctgtcagtgcccctttgggttccgactggacaccacc
ggtatcaactgtgaggatatcaacgagtgtgaccttggaaacccctgtggcaacgggacc
tgcaccaacgtcatcggggcctttgagtgcacttgtgatgagggctttgagccgggaccg
atgatgtcatgcgaggacgtgaacgaatgtgccctgaactctctgctctgtgccttccgc
tgtgtgaacacgcacggctcctacgagtgcaagtgccccaccggctacgtactccgggag
gaccgcaggatgtgcaaagaccagaacgagtgtgaggatggcattgacgactgcgagtca
cgaggaatgacatgcaagaacctcatcggcacgtacatgtgcatctgcgctccaggtttc
atgcggatgcccaacggagagggctgtatggacctgaacgagtgcagcactaagccaggc
atctgtcagaatggacgctgtgagaacacggtgggcagttaccgctgtaagtgtgaccaa
gggttcaaccccagcccaacacagactgactgcatcgacaacaggcagggcttctgcttc
acggaggtcctccagaccctgtgccagatgacatccagcagtcgcaacagtgtcaccaag
tctgagtgctgctgcgacgggggccgcggctgggggcccacctgtgaactgtgccctctg
ccaggcaccactcagtacaagaggatgtgcccactcggccctgggtacacaaccgatggc
aaagacattgatgagtgtaaggtgatgggtaacctgtgcaagaacggccagtgcatcaac
acgctgggctcctacaactgtgtctgtaagccaggctatacccctgatatcattggaact
ctatgcatcgacgtggatgagtgttcacaggctccaaagccctgtaacttcatctgtaag
aacacagagggaagctacctgtgctcctgccccagaggctacatcctgcaggaagacggc
aagagctgcaaagacctggatgaatgtcagaccaagcagcacaactgccagttcttgtgt
gtcaacactatcggaggcttcacctgcaaatgccctccaggattcacgcagcaccacact
gcctgcattgacaataatgagtgttccgctgatcctgcgctctgtggaggcaatggagtc
tgtcagaacagtccaggcagcttcaactgcgagtgccagcgcggcttctctctggaccac
aacggccagagctgtgaagatatggatgagtgcgatggaaatcaccggtgccagcatggc
tgtcagaacctggtgggtggataccgctgcagctgtcctcaaggttatctgcagcattac
cagtggaaccagtgtgtggatgagaacgagtgccagaacagccaggtctgtggcagcgct
tcctgccacaacaccctgggcagcttccgctgcatctgccccaacggcttcaactttgag
cagatgagcggcggctgcgcggacgtcaacgaatgctcgcacacgcagaacccctgcaac
tacggctgcgccaacaccgacggagggtacctgtgcggctgcccaccgggctacttcagg
gcaggacaagggcactgtgtctccggcgtgggctttggcgctggagttccactaggaggt
caaggtcacggtcacggtggagagggagagggagagggagacgacaactccctgtcccca
gaggcctgctatgaatgcaagatcaacggctatcccaagaaaggcaggaagcgcagaagc
accaatggaactcttgatgaagctttgggagactcacagaatgagcaggagactatcagc
ctggacagtgtggacactgaagacaccctcctgttcaacctaaacatcagtgacgtgaag
agcaaggaccacatcctggagttcatcccagcactctccactctcaacaaccatgtccgc
tacaccatcgacttcggcaacgacgagggcctcttcaaaatcaaccagaaggagggcata
agctatctccatttagccaagaaaaaagctctcgtccccggggccttctttttacaagtc
agcagtgtgcctctgtttaagaagaaagaactggctcagttggaggacaggcatgacaaa
gactacctcacgggacagctgggggacacactgaaaatgaaagtgcagattgtattccat
taa
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integrated database retrieval system
