Clupea harengus (Atlantic herring): 105889635
Help
Entry
105889635 CDS
T09045
Symbol
cacna2d1a
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-1a
KO
K04858
voltage-dependent calcium channel alpha-2/delta-1
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04260
Cardiac muscle contraction
char04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105889635 (cacna2d1a)
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
105889635 (cacna2d1a)
04261 Adrenergic signaling in cardiomyocytes
105889635 (cacna2d1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105889635 (cacna2d1a)
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
105889635 (cacna2d1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA
VWA_3
VWA_2
dCache_1
MCP-like_PDC_1
Cache_3-Cache_2
DUF2201
DUF3146
Motif
Other DBs
NCBI-GeneID:
105889635
NCBI-ProteinID:
XP_031439193
UniProt:
A0A6P8GJM0
LinkDB
All DBs
Position
16:785467..857185
Genome browser
AA seq
1111 aa
AA seq
DB search
MDVYKIPTIALLVLSVFNSVSTVQFPTPVIVQDWVERMQKDLVSLIDAESGAQNLPEIFR
NYRKHFTVEHNDAQQLVESAATDIEKLLLNRSRALKNLASAAEEIQRNYQWQDEFEEGDV
SYYNAKDSNETDTEYPKNRVKPVFNQDPAFKRLVSFNETAVHIPTDIYEGSTIVLNELNW
TDALVDVFRKNREEDPSLVWQVFGSATGLARYYPASPWIDKDKTPNKIDLYDVRRRPWYI
QGAASPKDMLILVDASGSVSGMTLRLIRTSVNEMLETLSDDDYVNIVSFNEDAKKAACFD
NLVQANVRNKKILKDAVQNITAKGITNYKDGFDLAFQQLSENLNVTRANCNKIIMLFTDG
GEERASEIFEKYNPDKRVRIFTFSVGQHNYDKAPIQWMACTNKGYYYEIPSIGAIRINTQ
EYLDVLGRPMVKANQKAKRVQWTNVYMDALELGQVITGTLPVFNQTRIKSNKHKGKPQQN
PLILGVMAVDVSLDDIKKLTPRFSFGPNGYYFAIDPNGYVLLHPNLKPKITTFQEPLALD
FLDAELEDEIKVEIRRNMIDGDTGNRTFTTFVKSQDERYVDQGVRTYTWAHVRGTDYSLA
LALPDYSLHYLRAAIGDTITQAKFSETLQVEKFDEYGFTFIAQREYCTDLRPSNNNTEFL
INFNKYIDRNTPNHPLCNSALVNKLLLDAGITSELVKKWSEQKLSDRVSARFVATDGGIT
RVYPSSAGLDWSESTYDAYEIYDVYEAYKTYNMFETYESSFYKRSLDNDLYIFTPPVYNP
RSNVTVDSILVSKTVDLNIDGVKLKPAVVGVKLDVESWMESFINATAKTNPAICEDELCG
CQRNDEFVDCVLLDDGGFLIMANRDDYIRQIGQFFGMIDPSLMRSLINESLFSFNKTYDY
QSTCEPHKETRSAAGPRSVYVPTIADMLHLGWWASAAAWSIMQQLFVSLTFPSFLEAVDT
DEELPDGASRESCINEQSQYFFGNSETSFFGSVDCDTCLRQFHAEKLSGTNLVFVIADAK
LACLSCDQKPLVQGKQPSPGPDPCELALNPRYRKGPDACFDNNASEQDVDCGGVSGLSPS
LWVLVLLQLALLGLSNASGHGTIMPIMTTAQ
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggatgtgtataaaatccctaccattgcactcctagtgctttcggttttcaacagtgtt
tccaccgtgcagtttccaacaccagtcattgtgcaggactgggtggagcggatgcagaag
gatttggtgtctttgattgatgctgaaagtggagctcaaaacctgcctgagatctttcgg
aactacaggaaacatttcacggtggagcacaatgatgctcagcagctggtggagagtgcc
gctaccgacatcgagaagctccttctaaatcgctccagagctctaaagaatctggcttcg
gcagcagaggagattcagaggaattatcagtggcaggatgagtttgaggagggtgatgtt
tcatattacaatgccaaagacagtaatgaaacggatactgaatatccaaagaaccgagtg
aaaccagttttcaatcaggacccagccttcaaacgtttggtgtccttcaacgaaacagct
gtccatatacccacagacatctatgaaggctccaccatagttcttaatgagctcaactgg
acagatgctctggtggacgtcttcagaaagaacagagaggaggatccttcattggtctgg
caagtgtttggcagtgcaactgggctggcccgctactacccagcatccccatggatagac
aaagataaaacacctaacaaaattgatctatatgatgtcagacggagaccatggtacata
caaggcgctgcatcgcctaaggacatgctgattctggtggatgcgagtgggagtgtgtct
ggaatgacactgagactgatccgcacatcagtcaacgagatgctggaaaccctctctgat
gatgactatgtcaatatagtttctttcaatgaagatgcgaaaaaggctgcctgctttgac
aacttggtccaagccaacgtccgtaacaaaaagatcttgaaagatgcagtgcagaacatc
acggcaaaaggaatcacgaattacaaggatggttttgatctggcctttcaacagctgtcg
gaaaatctaaatgtgacgcgtgccaactgtaacaagatcatcatgctcttcacggacggc
ggggaagagagagcctcagagatctttgaaaagtacaatccggataagagggtgcgtata
ttcacattttcggtgggacagcacaactatgacaaagcacctattcagtggatggcttgc
accaataaagggtactactatgagatcccatctataggtgccatcaggatcaacacacag
gaatacttagatgtgctggggaggcccatggtcaaggccaaccagaaggcaaaacgggtc
cagtggaccaacgtgtacatggatgctctggagctgggacaggtgatcacgggaacactt
ccagtcttcaatcagaccagaattaaaagtaacaagcataaaggaaagccccagcagaat
ccactcatccttggagtgatggccgttgacgtttcactcgatgacatcaagaagctaacg
ccacgcttttcatttggaccaaatggatactattttgctattgatccaaatggatatgtt
ttgctccatccaaacctgaagcccaagataacaacattccaggagccgctggcactggat
ttcttagatgcagaattagaagatgagattaaagtggagatcagaagaaacatgattgat
ggcgatactggtaatcgaacatttaccacatttgtgaagtcccaggatgagcgatatgtg
gaccagggtgtcagaacctacacctgggcccatgtccgtgggactgactacagtttagct
ttggcactaccagactacagtcttcactatctccgtgcagcgattggagacaccattacc
caggccaaattttctgagactctgcaggtggaaaagtttgatgaatatggattcacgttc
attgcacaaagggagtactgcacggacttgaggccctcgaacaataacacagagttcctg
attaacttcaataagtatattgacaggaacacacccaaccaccctctctgcaacagtgct
ctggtgaacaaactgctcctggacgctgggatcacatcagaactggtcaagaagtggtca
gaacagaagctgagtgacagggtgtctgctcgcttcgtggccacggatggaggcatcaca
cgcgtgtatcccagcagtgctggtcttgattggtcagagagtacttatgatgcctatgag
atatatgacgtgtatgaagcatacaagacttacaatatgtttgagacgtacgagtcaagt
ttttacaaaaggagcctggacaacgacctttacatattcacaccaccagtctacaacccc
cgttccaatgtcacagttgactcaattctggtgagcaagactgtggacctcaacattgat
ggtgtcaagctcaaacctgcagtggtgggtgtgaagctggatgttgagtcctggatggag
agtttcataaatgctaccgctaagaccaatcctgcgatctgcgaagatgaactctgtggc
tgtcaaagaaatgatgagttcgtggactgtgttctcctggatgacggtggcttcctgatt
atggccaatcgtgacgattacatcagacagattgggcagttcttcggaatgattgacccc
tcactgatgaggagcctgataaatgagtctctgttctccttcaataagacgtacgactac
cagtccacgtgtgaaccccataaagaaaccagatctgctgctggcccgcgctctgtttac
gtgcccactatagcagatatgctgcatcttggctggtgggcttctgcggcagcctggtcc
atcatgcagcagctgtttgtttcgttgactttcccaagtttcttagaagcagtggacaca
gatgaggagctccctgatggggcgtcgagggaaagctgtattaatgagcagtctcaatac
ttctttgggaacagtgaaacgtccttctttggtagtgtggactgtgacacatgcttaagg
cagttccatgccgagaaactcagcgggaccaatctggtgtttgttatagctgatgccaag
ctagcctgcctgtcatgtgaccaaaaacctctcgtccaagggaaacagccctcccctgga
ccagatccttgtgaactcgccctgaatcctcgctacaggaagggtccagacgcgtgcttc
gacaacaacgcaagtgagcaggatgtggactgtggtggagtgtctggcctgagcccctct
ctgtgggtccttgtgctgctgcagctggccctgcttgggttatcgaatgcctctggacac
gggactatcatgcctatcatgacgactgctcagtga
DBGET
integrated database retrieval system
