Clupea harengus (Atlantic herring): 105890784
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Entry
105890784 CDS
T09045
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105890784 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
char03041
]
105890784 (eftud2)
Spliceosome [BR:
char03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105890784 (eftud2)
Complex C
U5 SnRNP specific factors
105890784 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
105890784
NCBI-ProteinID:
XP_031423145
Ensembl:
ENSCHAG00000016684
UniProt:
A0A6P8FHV8
LinkDB
All DBs
Position
1:complement(10147702..10161115)
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AA seq
970 aa
AA seq
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MEADLYDEFGNYVGPELDSDEDDELEAEDRDVDEVDEDDEDEQGEGDEDVPGMEVVLHED
KKYYPTAEEVYGPEVETIVQEEDSQPLTEPIIKPVKNKQFTLMEQELPATVYDMEFLADL
MDNPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGIK
SSPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKIDRLIVELKLPPTDAYYKLRHIVDEVNGMLSTYSTDESLVVSP
LLGNVCFASPQYSICFTLASFAKIYSDTHGDINYTEFAKRLWGDIYFNPKTRKFTKKAPT
SNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCNR
FFGEFTGFVDMCVHHIPSPQAGARAKIEHSYTGGLDSDLGEAMTECDPDGPLMCHTTKMY
STDDGVQFHAFGRVLSGTLQAGQAIKVLGENYSLEDEEDSQVCTVGRLWISVARYQIEVN
RVPAGNWILIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQINWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVFH
HWQIVPGDPLDKGIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVMLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagatctctatgatgagtttggcaattacgtcggaccagagctggactcggac
gaggatgatgagctggaggctgaggacagggacgttgatgaggtagatgaggatgatgag
gacgagcagggggaaggagatgaagatgtccctggaatggaggtggtcctgcatgaggac
aagaagtattatcccaccgctgaggaggtttatggaccagaggtggagactatagtccag
gaggaggactcgcaacctttaacagagcccatcattaagcctgtgaaaaacaaacagttt
accctcatggagcaggaactgccagcaactgtctatgacatggagttcctggctgatctg
atggacaatccggagctgatcaggaatgtcaccctgtgtggtcacctgcatcatggaaag
acgtgttttgtggactgcttgattgaacagactcacccagaaatccggaaaagagatgat
gcagatcttcgttatacagacatcctcttcactgagcaggagagaggagtaggaattaag
agcagcccagtcacaatggtactgccagactcaaggggcaaatcctacctcttcaacatc
atggacacaccaggtcatgtgaacttctcagacgaggtgaccgcggggatccgcctctcg
gacgggatcgttctgttcatcgacgctgcagagggcgtgatgttgaacacagagcgtctg
atcaagcatgccgtgcaggagcgactggccatcaccatctgcatcaacaaaatcgaccgg
ctgattgtggagctcaagctgccccccaccgacgcctactacaagctgcgccacatcgtg
gacgaggtcaacggcatgctcagcacatactccacagatgagagtctagtggtgtctcct
ctcctggggaatgtgtgcttcgcctcccctcagtacagcatctgtttcacgcttgcctct
ttcgccaagatctactcagacacacatggtgacatcaattatacagagtttgccaagagg
ctatggggtgacatatacttcaacccaaaaacgcgaaagttcaccaagaaggctcccacc
agtaactcccagcgcagctttgtggagtttgttctggaacccctctataagatcctgtct
caggtggtgggggacgtggacacgtcgctgccgcgggtgctggatgagctgggcatccac
ctgaccaaagaggagctcaagctcaacatccggccgctgctcaggctcgtctgcaaccgc
ttctttggggagttcacaggttttgtggacatgtgtgtgcatcacatcccctccccccag
gctggggctcgagccaagattgagcacagctacacagggggcctggactccgacctaggg
gaagcaatgactgagtgtgacccagacggtcccctcatgtgccacaccactaagatgtac
agcacggatgacggggtccagttccacgcctttggtcgggttctaagcggaaccctgcag
gcgggtcaggccatcaaggtactgggggagaactactcgctggaggatgaagaggactcg
caggtgtgcaccgttggccgcctctggatttctgttgccaggtaccagattgaggtgaac
cgtgttccagcaggaaactggatcttgattgaaggctgcgatcagcccatcgtcaaaaca
gccaccatcacagaaccacgaggaaatgaggaggctcagatcttcaggccgctgaagttt
aacacggcctcagtgatcaagattgctgtggagcccgtcaacccatctgagctgcccaag
atgttggatggtctgaggaaagtcaacaagagctacccctctctgaccactaaggtggag
gagtctggagagcatgtcatattgggaacaggtgagctctacctggactgtgtgatgcac
gacctgcgcaagatgtactccgagattgacattaaggtggctgaccctgtggtgaccttc
tgcgaaacggttgtcgagacatcatcactgaagtgtttcgccgaaacgcccaataaaaag
aataagatcaccatgattgcggaaccgctggagaaggggctggcagaggacatagagaac
gaagtggtacagatcaactggaacagaaagaagttgggagagttcttccaaaccaagtat
gactgggatctgctggccgctcgttccatctgggcctttgggccagacaccaccggaccc
aacattctagtagacgacactcttccttctgaggtggataaagctttgctgggctctgtg
aaggacagcatcgttcagggattccagtggggaacgagagagggacctctgtgtgatgaa
cccatccgtaatgtgaagttcaagatcctggacgcagtgatcgcccaggagccgctccac
agaggtggagggcaggtcatccccaccgcccgacgagtagtttactcggccttcctcatg
gccacacctcggttaatggagccatactactttgtggaggttcaagcaccagctgattgc
gtgtcagcagtctacactgtactcgcaaggagaaggggtcacgtgacccaggatgcccct
atcccaggctctccactgtacaccatcaaggccttcattcctgccatcgactcgttcggc
tttgagacggatctgcgcacacacactcagggacaggctttcgcactgagcgtgtttcac
cactggcagattgtgccgggtgatcccctggataaggggattgtaattcgtcccttggag
ccccagcctgcccctcatctcgcccgagagttcatgatcaaaacacgccgacgcaaggga
ttgagcgaggatgtaagtatcagcaagttcttcgacgatcctatgttgttggagctggcc
aaacaggacgtgatgctcaactaccccatgtaa
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