KEGG   Clupea harengus (Atlantic herring): 105891184
Entry
105891184         CDS       T09045                                 
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04010  MAPK signaling pathway
char04137  Mitophagy - animal
char04141  Protein processing in endoplasmic reticulum
char04210  Apoptosis
char04217  Necroptosis
char04621  NOD-like receptor signaling pathway
char04622  RIG-I-like receptor signaling pathway
char04920  Adipocytokine signaling pathway
char05132  Salmonella infection
char05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    105891184 (traf2b)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    105891184 (traf2b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    105891184 (traf2b)
  09143 Cell growth and death
   04210 Apoptosis
    105891184 (traf2b)
   04217 Necroptosis
    105891184 (traf2b)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    105891184 (traf2b)
   04622 RIG-I-like receptor signaling pathway
    105891184 (traf2b)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    105891184 (traf2b)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    105891184 (traf2b)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    105891184 (traf2b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105891184 (traf2b)
   04121 Ubiquitin system [BR:char04121]
    105891184 (traf2b)
Enzymes [BR:char01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105891184 (traf2b)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     105891184 (traf2b)
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    105891184 (traf2b)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf zf-C3HC4 TRAF3_RING zf-C3HC4_4 zf-RING_6 zf-C3HC4_3 zf-C3HC4_2 TRAFD1-XIAF1_ZnF zf-C3HC4_5 CENP-F_leu_zip
Other DBs
NCBI-GeneID: 105891184
NCBI-ProteinID: XP_012672797
Ensembl: ENSCHAG00000000825
UniProt: A0A6P3VI51
LinkDB
Position
12:complement(13847160..13869682)
AA seq 567 aa
MMMARMSLPSSLDSSLPGISRSVLSSHMETKYQCQQCDDILRKPVQAKCGHRYCVFCFNQ
LTSSGPKPCEACRVEGIFEESQSMLNEKEAFPDNAARREIDGLPAKCPNEGCPWTGTMKE
FEGQHEGQCDYETVTCEACQLHILRNDKDRHNERECEARTLNCKYCKVSFNFKDIKAHDE
ICTKFPMQCKDCGKKKIPREKFPEHVKTCAKSKMACQFSKVGCHAVVDNGKQHDHEQSSI
MDHLRMVLTALSSVVLVQSDGFGEYQDDCGGLGLYRAPEEKAVAEAAASGKAYSNSSSSR
AGGGEGRRDSNGLGLYQAPDEGTAGASVASGRGRKSTVGLEQKVTALENIVCVLSRELER
SSLTQEAQARQHHLDQEKIEGLHSKIRQLERTLTMRDLKLSETEQTLTELELCTFDGVFV
WKVADFSHRRQDALAGRSPALFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMR
GKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDTSSTSFQRPISEMNIASGCPLFCPL
AKLASAKNSYVREDTIFIKAIVDLTGL
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgatgatggcacgcatgtctttgccatcttcactggactcctcgttaccggggatcagt
cggtctgttctcagcagtcacatggagacgaagtaccagtgccagcagtgtgatgatatc
ctcaggaagccagttcaagctaaatgtggccatcgatactgtgtgttttgcttcaaccag
ctcaccagctccggccccaagccctgtgaagcatgtcgtgtggagggtatatttgaagag
tctcagtccatgctgaacgaaaaagaagcgtttccagacaatgcggcgcgccgggagatt
gatggccttccagcaaagtgcccaaatgaaggctgcccttggactgggaccatgaaagag
tttgagggacagcacgaaggtcagtgtgactacgagacagttacatgtgaagcgtgtcaa
cttcacatcttgcgcaatgacaaagaccggcacaacgagagagagtgtgaagccaggacc
ctgaactgcaaatactgcaaagtttccttcaacttcaaagatatcaaggctcatgatgag
atctgcacgaaattccccatgcagtgcaaagactgcggaaagaaaaagatcccacgagaa
aagtttccagaacatgttaaaacctgtgccaagagcaagatggcatgtcagttcagtaaa
gttggctgccatgctgtggttgacaatgggaagcagcatgaccacgaacagtcctccata
atggaccacctgcggatggtcctgaccgccctgtcgtcggtggtgctggtgcaaagcgac
gggttcggcgagtaccaggacgactgcggtggactggggctgtaccgcgcacccgaggaa
aaggccgtcgcggaggcagcagcctctggaaaagcctacagcaacagcagcagcagcagg
gccggaggaggagaaggacgaagggatagcaatgggctggggctttaccaggctccagac
gaagggacggcaggggccagcgtagcctctgggaggggaaggaagagcacagtggggctg
gaacagaaggtgacggcgctggagaacattgtgtgtgtgctgagtcgagagctggagaga
agctcgcttacacaggaagcccaggcgcgccagcatcacttggaccaggaaaagattgag
ggcctccacagcaagattcgtcagctggagcggactctgactatgagggacctaaagtta
tctgagacggagcagactctcaccgagctggagctctgcacattcgatggcgtgtttgtc
tggaaggtcgcagacttcagccaccgcagacaggatgctctcgccggacgatctccagcc
ctgttttctcctgcgttctactccagtaagtacggctataagatgtgcctgagactctac
cttaacggagatggcacaggcagagggacacacctgtctttattcttcgtggtgatgcga
gggaagtacgacgccctcctcaagtggccgtttagtcagaaggtgaccttgatgctgtta
gaccaaaacaaccgggagcacatcatcgatgccttccggcccgacaccagctccacgtcc
ttccagcgacccatcagcgagatgaacatcgccagcggctgccccctcttctgcccgctg
gccaagcttgcctcggccaagaactcctatgtcagggaagacaccattttcatcaaagcc
atagtagacctaacaggtctttag

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