Clupea harengus (Atlantic herring): 105891184
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Entry
105891184 CDS
T09045
Symbol
traf2b
Name
(RefSeq) TNF receptor-associated factor 2 isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04137
Mitophagy - animal
char04141
Protein processing in endoplasmic reticulum
char04210
Apoptosis
char04217
Necroptosis
char04621
NOD-like receptor signaling pathway
char04622
RIG-I-like receptor signaling pathway
char04920
Adipocytokine signaling pathway
char05132
Salmonella infection
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105891184 (traf2b)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105891184 (traf2b)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
105891184 (traf2b)
09143 Cell growth and death
04210 Apoptosis
105891184 (traf2b)
04217 Necroptosis
105891184 (traf2b)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
105891184 (traf2b)
04622 RIG-I-like receptor signaling pathway
105891184 (traf2b)
09152 Endocrine system
04920 Adipocytokine signaling pathway
105891184 (traf2b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105891184 (traf2b)
09171 Infectious disease: bacterial
05132 Salmonella infection
105891184 (traf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105891184 (traf2b)
04121 Ubiquitin system [BR:
char04121
]
105891184 (traf2b)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105891184 (traf2b)
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
105891184 (traf2b)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
105891184 (traf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
zf-C3HC4
TRAF3_RING
zf-C3HC4_4
zf-RING_6
zf-C3HC4_3
zf-C3HC4_2
TRAFD1-XIAF1_ZnF
zf-C3HC4_5
CENP-F_leu_zip
Motif
Other DBs
NCBI-GeneID:
105891184
NCBI-ProteinID:
XP_012672797
Ensembl:
ENSCHAG00000000825
UniProt:
A0A6P3VI51
LinkDB
All DBs
Position
12:complement(13847160..13869682)
Genome browser
AA seq
567 aa
AA seq
DB search
MMMARMSLPSSLDSSLPGISRSVLSSHMETKYQCQQCDDILRKPVQAKCGHRYCVFCFNQ
LTSSGPKPCEACRVEGIFEESQSMLNEKEAFPDNAARREIDGLPAKCPNEGCPWTGTMKE
FEGQHEGQCDYETVTCEACQLHILRNDKDRHNERECEARTLNCKYCKVSFNFKDIKAHDE
ICTKFPMQCKDCGKKKIPREKFPEHVKTCAKSKMACQFSKVGCHAVVDNGKQHDHEQSSI
MDHLRMVLTALSSVVLVQSDGFGEYQDDCGGLGLYRAPEEKAVAEAAASGKAYSNSSSSR
AGGGEGRRDSNGLGLYQAPDEGTAGASVASGRGRKSTVGLEQKVTALENIVCVLSRELER
SSLTQEAQARQHHLDQEKIEGLHSKIRQLERTLTMRDLKLSETEQTLTELELCTFDGVFV
WKVADFSHRRQDALAGRSPALFSPAFYSSKYGYKMCLRLYLNGDGTGRGTHLSLFFVVMR
GKYDALLKWPFSQKVTLMLLDQNNREHIIDAFRPDTSSTSFQRPISEMNIASGCPLFCPL
AKLASAKNSYVREDTIFIKAIVDLTGL
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggcacgcatgtctttgccatcttcactggactcctcgttaccggggatcagt
cggtctgttctcagcagtcacatggagacgaagtaccagtgccagcagtgtgatgatatc
ctcaggaagccagttcaagctaaatgtggccatcgatactgtgtgttttgcttcaaccag
ctcaccagctccggccccaagccctgtgaagcatgtcgtgtggagggtatatttgaagag
tctcagtccatgctgaacgaaaaagaagcgtttccagacaatgcggcgcgccgggagatt
gatggccttccagcaaagtgcccaaatgaaggctgcccttggactgggaccatgaaagag
tttgagggacagcacgaaggtcagtgtgactacgagacagttacatgtgaagcgtgtcaa
cttcacatcttgcgcaatgacaaagaccggcacaacgagagagagtgtgaagccaggacc
ctgaactgcaaatactgcaaagtttccttcaacttcaaagatatcaaggctcatgatgag
atctgcacgaaattccccatgcagtgcaaagactgcggaaagaaaaagatcccacgagaa
aagtttccagaacatgttaaaacctgtgccaagagcaagatggcatgtcagttcagtaaa
gttggctgccatgctgtggttgacaatgggaagcagcatgaccacgaacagtcctccata
atggaccacctgcggatggtcctgaccgccctgtcgtcggtggtgctggtgcaaagcgac
gggttcggcgagtaccaggacgactgcggtggactggggctgtaccgcgcacccgaggaa
aaggccgtcgcggaggcagcagcctctggaaaagcctacagcaacagcagcagcagcagg
gccggaggaggagaaggacgaagggatagcaatgggctggggctttaccaggctccagac
gaagggacggcaggggccagcgtagcctctgggaggggaaggaagagcacagtggggctg
gaacagaaggtgacggcgctggagaacattgtgtgtgtgctgagtcgagagctggagaga
agctcgcttacacaggaagcccaggcgcgccagcatcacttggaccaggaaaagattgag
ggcctccacagcaagattcgtcagctggagcggactctgactatgagggacctaaagtta
tctgagacggagcagactctcaccgagctggagctctgcacattcgatggcgtgtttgtc
tggaaggtcgcagacttcagccaccgcagacaggatgctctcgccggacgatctccagcc
ctgttttctcctgcgttctactccagtaagtacggctataagatgtgcctgagactctac
cttaacggagatggcacaggcagagggacacacctgtctttattcttcgtggtgatgcga
gggaagtacgacgccctcctcaagtggccgtttagtcagaaggtgaccttgatgctgtta
gaccaaaacaaccgggagcacatcatcgatgccttccggcccgacaccagctccacgtcc
ttccagcgacccatcagcgagatgaacatcgccagcggctgccccctcttctgcccgctg
gccaagcttgcctcggccaagaactcctatgtcagggaagacaccattttcatcaaagcc
atagtagacctaacaggtctttag
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integrated database retrieval system