Clupea harengus (Atlantic herring): 105891205
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Entry
105891205 CDS
T09045
Symbol
rfng
Name
(RefSeq) beta-1,3-N-acetylglucosaminyltransferase radical fringe
KO
K05948
fringe [EC:
2.4.1.222
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00514
Other types of O-glycan biosynthesis
char04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00514 Other types of O-glycan biosynthesis
105891205 (rfng)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
105891205 (rfng)
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
char01003
]
105891205 (rfng)
Enzymes [BR:
char01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.222 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
105891205 (rfng)
Glycosyltransferases [BR:
char01003
]
Glycan extension
O-Glycan
105891205 (rfng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fringe
Glyco_tranf_2_4
Motif
Other DBs
NCBI-GeneID:
105891205
NCBI-ProteinID:
XP_012672816
Ensembl:
ENSCHAG00000022977
UniProt:
A0A6P3VI62
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Position
23:complement(14778848..14791912)
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AA seq
391 aa
AA seq
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MHLSPVGISKLCFLLSLALCAFLMLLIPTLQAPARQGDLPPPLPRPQLRPKPAGARRGLG
AEVLPPGGAHPNKTTLSQRVTLATSPQTPNERTAAELRSLQGAEDAAAQRRYLGSRSRDP
LEPKDIFLAIKTTKKYHKSRLELLFQTWISRAKEQTFIFTDGEDKELRKKPGLNVINTNC
SAAHTRQALCCKMSVEYDKFIESQKKWFCHVDDDNYVVLPSLLRLLASYSHTQDVYLGRP
SLDHPIEAAERVKSDGSVSVKFWFATGGAGFCISRGLALKMSPWASLGNFITTAEKIRLP
DDCTIGYIIEALLEVSMTHTHLFHSHLENLQRLPTNSVLDQVTLSYGGFENRRNVVSVGG
VFSLAEDPSRFKTIHCLLYPETEWCPIRSHP
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgtcccctgtcggcatcagcaaactctgcttcctcctctcgctggccctctgc
gccttcctcatgctcctgatccccaccctccaggcccccgcacgccagggtgacctgccc
ccgcccctgccccgaccccagctccgtcccaagcccgccggtgcccggcggggtctcgga
gcagaggtcctgccgcccggtggtgcccacccgaacaagaccacgctgagtcagagggtc
acgctcgccactagcccacagactcctaacgagaggaccgcagccgagctgagatccctc
cagggggcagaggacgccgctgctcaaaggaggtacttggggtctcgttccagagatccg
ctggagccgaaggacattttcctcgccatcaaaacgaccaagaagtaccacaagtctcgt
ctcgagttgctttttcagacctggatatccagggcaaaggagcagaccttcatattcacc
gatggtgaggataaggagctgaggaagaaaccagggctgaatgtgatcaacactaactgc
tcagcggcccacacccgtcaggccctgtgctgcaagatgtctgtggagtacgacaagttc
atcgagtcgcagaaaaagtggttctgtcacgtggacgacgacaactacgtggtcctcccc
agcctgctgcggctactcgcctcctactcccacacacaggatgtgtacctgggccgcccg
agcctggaccaccccatcgaggcggccgagagggtcaagagcgatggatcagtctcggtg
aagttctggttcgccacgggtggagccgggttctgcatcagtaggggactggcactcaag
atgagcccctgggcaagcctcggcaacttcatcaccacggcagagaagatccgtctccct
gacgactgcaccatcggttacatcatcgaggcgttgttggaggtctccatgacgcacaca
cacctttttcactcacacctggagaacctgcagcggttgcccaccaacagtgtgttagat
caggttaccctgagctatggaggatttgagaacagaaggaatgtggtcagtgttggaggt
gttttctcattggctgaagacccgtcacggttcaaaaccatccactgccttctgtaccca
gagacggaatggtgccccataaggagtcacccctga
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