Clupea harengus (Atlantic herring): 105891516
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Entry
105891516 CDS
T09045
Symbol
tdg.1
Name
(RefSeq) thymine DNA glycosylase, tandem duplicate 1 isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
105891516 (tdg.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
char03400
]
105891516 (tdg.1)
Enzymes [BR:
char01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
105891516 (tdg.1)
DNA repair and recombination proteins [BR:
char03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
105891516 (tdg.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
105891516
NCBI-ProteinID:
XP_012673139
Ensembl:
ENSCHAG00000000720
UniProt:
A0A6P3VJT4
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Position
3:complement(27385914..27391693)
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AA seq
452 aa
AA seq
DB search
MEERRYGSVPVPSEYLQNWVQAAQQHLQTLQAQYPHLANGADYMDGAMENGAMMGMPGQP
QALVQQAPQQAPAKGKRGRAASKEPKVKPPPKAKPPPKPKPEPKAKPGPKPKKAKLDKGA
TEGVDGQEKIDETFKKVRRKVDRFKGMSEEEVMSRTLPDILKDNLDYVIIGINPGLMAAY
IGRWFPGPGNHFWKCLFLSGFTDELLNHTADDSLPDKYGIGFTNMVERATPGSKDLSTKE
LREGGKILVEKLKQFKPLIAVFNGKCIYEMFCREIFGKKPKKCDFGLQEHRIPDCETALY
LMPSSSARCAQFPRAQDKVHFYIKLRELRDQLKGQAKPKEVEEIQYSFDLGLAKQDAKRM
AVKEEAYDPGYEAAYGGAYVEPGAEPGAEPGPGAGAEAEAGQSNGHCTFSSNAEIETAEK
TSAPPADEGVVPDGRWMTQTFDDQIPDITASS
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaggcgttatggatctgtgcctgtcccctcggaatatctacagaactgggtt
caagctgcacagcagcacctgcagacattacaggcccagtaccctcacttggcaaacggt
gcagactacatggacggcgcaatggaaaatggggctatgatggggatgcctggccaacca
caggccctggtccaacaagctcctcagcaagcacctgccaagggaaagagagggcgcgca
gccagtaaagagccaaaggttaaaccaccgccaaaggccaaaccaccgccaaagcccaag
cctgaaccaaaagccaaaccgggcccaaagcccaaaaaggccaagctggataagggtgcc
acagagggtgtagatggccaggagaagattgatgagacgttcaagaaagtgaggaggaaa
gtggatcgcttcaaaggcatgtcggaggaggaggtcatgagcaggacactcccagacatc
ctcaaagacaatctggactatgtgattattggaataaatcctggactaatggcagcttac
attggaagatggtttcctggtccaggaaatcatttttggaagtgcctgttcctgtctggc
ttcacagatgaactactcaatcacacagctgatgacagcttgcctgataaatatggaatt
ggcttcaccaacatggtggaacgtgccacaccaggaagcaaagatctttcaaccaaagaa
ctccgtgagggaggcaaaattttggttgagaaactgaaacaattcaagcctctcatagca
gttttcaatggaaaatgtatctatgagatgttctgcagggagatctttggaaaaaagcca
aagaagtgtgattttggcttgcaggaacataggattcctgactgtgaaacggccttgtac
ctgatgccttcctctagtgcccgatgtgcccagttcccacgtgcccaggacaaagtgcac
ttctatattaagctgagggagttacgagaccaactgaagggtcaggctaagccaaaagag
gtggaagaaatccagtactcctttgacctgggcttggccaaacaggatgccaagaggatg
gctgtcaaagaggaggcgtacgaccctggttacgaggcagcctatggcggtgcgtatgtt
gaaccaggggccgaaccaggggccgagccagggccaggggcaggggcagaagccgaggct
ggacagagcaatggtcactgcacattttcgtccaatgcagagatagagactgcagagaag
acctctgctccccctgcggatgaaggagtggtacccgatggccggtggatgactcaaacc
tttgacgatcagatccctgacataaccgcctcctcataa
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