Clupea harengus (Atlantic herring): 105891881
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Entry
105891881 CDS
T09045
Symbol
tap1
Name
(RefSeq) antigen peptide transporter 1 isoform X2
KO
K05653
ATP-binding cassette, subfamily B (MDR/TAP), member 2 [EC:
7.4.2.14
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char02010
ABC transporters
char04145
Phagosome
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
105891881 (tap1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
105891881 (tap1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105891881 (tap1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
char02000
]
105891881 (tap1)
Enzymes [BR:
char01000
]
7. Translocases
7.4 Catalysing the translocation of amino acids and peptides
7.4.2 Linked to the hydrolysis of a nucleoside triphosphate
7.4.2.14 ABC-type antigen peptide transporter
105891881 (tap1)
Transporters [BR:
char02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB2, 3, 8, 9, 10 subgroups
105891881 (tap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_22
SMC_N
RsgA_GTPase
AAA_16
AAA_29
RNA_helicase
DUF5669
AAA_15
Motif
Other DBs
NCBI-GeneID:
105891881
NCBI-ProteinID:
XP_012673518
Ensembl:
ENSCHAG00000006649
UniProt:
A0A6P3VJ03
LinkDB
All DBs
Position
11:6580025..6587354
Genome browser
AA seq
737 aa
AA seq
DB search
MQKMSYFSPLLYILADMCVVQGVRHAQLSSFLIPRPFVVLWAGGLLRAGAQLFLTYTYPG
TLPWMKTLEGVQTQCVLSLLSPAYITFLWAVGQSTVELLWGWHSWEALLQNYVVVAVSLL
YWTRYMPNILSEKTQKPTKKNGASLQRLLGYMRPYAWRFTAVISLVIASSLGEMAIPHYT
GKMTDWIMNEDEPEAFSHAIKVMSLITIMSALCEFVCDLIYNITMSSIHTFIQGLVFKSV
LKQEIAFFDKSTTGDIVSRITTDTNTMSESLSEKLSLLMWYFWRVIFLFCFMINLSWKLS
LFTCMGLPIIWVIPQISGKFYQQLSKDVQESLAKANDVAIETFSSMKTVRSFANEDGEAE
RYNKRLQETYSLNKKEAAAYAVSTWTNSMSSLALKVSILYYGGRLVTGDDVSSGDLVSFV
LYELQFSSAVEVLMNYYPHVKKAIGGSEKIFEYVDRSPEIPPDGTLAPQKLNGNVEFQNV
TFSYPKRPDTAILKGLSLQLKPGQMTALVGPSGGGKSTCVNLLERFYQPEQGCILLDGEP
LLSYKDQYLHQKISVVCQEPKLFARSLKENIKYGKEDATDEDMIQAAKSAYAHDFITKLQ
DGYDTDAGAKGDRVSGGQKQRIAIARALIGKPKILVLDDATSSLDTKSEECVFEALAEMR
KKQQCSVLLIAHRLSAVEKADHIVFLQDGEVKEEGTHDQLVQIEEGLYAEFVKKQNTAIH
RNAGEGTICEEQEASSP
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaatgtcgtacttctcgccactactctatatattggcggatatgtgtgtggtt
caaggtgttcgccatgcccagctgtcctcgttccttatcccgcgtcctttcgtggtcctg
tgggctggggggctgctccgagctggtgcccaactctttctcacttacacctaccctggc
accctgccctggatgaagacccttgaaggggtgcagacccagtgtgttctcagcttgttg
tctccagcgtacatcacctttctctgggccgttgggcagtcaactgtggagctactgtgg
ggatggcattcttgggaagcgttactacagaattatgtggtggtggctgtgtccctgctg
tactggacccgttatatgccaaacattctctcggagaagacacaaaaacctaccaaaaag
aatggggcctctctgcaaaggttgctgggatacatgaggccatacgcctggcgtttcact
gcagtcatctccttagttattgcttcctcgttgggtgagatggccattccacactatacg
ggcaagatgactgattggatcatgaatgaagacgagcctgaggccttttctcatgccata
aaagtcatgtcattgatcaccatcatgagtgcgttgtgtgagtttgtgtgcgacctcata
tacaatatcaccatgagcagtatccacacattcatccagggcctggtcttcaagtcagtg
ctcaaacaggaaatcgctttctttgacaagtcaactacaggtgatatcgtgtcgcgaatc
acaacggacaccaacaccatgagcgagtccttgagtgagaagctgagtttgttgatgtgg
tacttctggagggtcatcttcctgttctgcttcatgatcaacctctcctggaaactgtcg
ctcttcacctgcatgggcctgcccatcatctgggtcattccacagatctccggaaagttc
tatcagcaactgtcaaaggacgtccaagagtctcttgccaaagccaatgacgttgccata
gagacgttctcctccatgaagacggtgcggagctttgccaatgaggacggggaggcggag
cggtacaataagaggctgcaggagacctactccctcaacaagaaggaagcagcagcctat
gcagtctccacatggaccaacagtatgtccagtctggctctgaaggtcagcatcttatat
tatggtggacgcctggtgacgggagatgatgtcagcagtggagacctggtgtcctttgtc
ctgtatgagttgcagttcagcagtgcggtggaggtgttgatgaattactaccctcatgtg
aagaaggccattggtggctcagagaagatatttgagtatgtggatcgaagtcctgagatt
ccacctgatgggactttggcaccgcaaaaactaaatggaaatgtggagttccagaatgtt
accttctcttatccaaagaggccagacacagctatacttaaggggctgtccctgcagctg
aagcctggccagatgacggcgctggtggggccctctggtggtgggaagagcacctgtgtg
aatctgctggagaggttctaccagccggagcagggatgcatcctgctggatggagagcca
ctgctcagctacaaggaccagtacctgcaccaaaagataagtgtggtgtgtcaggagccc
aagctgtttgctcgcagtctgaaggaaaacatcaaatatggcaaagaggacgccaccgat
gaggacatgatacaggcagccaaaagtgcctatgcccatgacttcatcaccaagctgcag
gacggctacgacacagatgctggcgccaaaggagacagggtctctggtggtcagaaacag
cgcatagccatcgctagagccctcatcgggaagcccaaaattcttgtgctggatgatgcg
accagctcactggacacgaagagtgaagaatgtgtcttcgaggctctggctgagatgagg
aagaagcagcagtgctccgtgctgctgatcgcccatcggctgagcgccgtggagaaggcc
gaccacatcgtcttcctccaggacggggaggtcaaggaggagggcacccatgaccagctg
gtccagatagaggagggtctgtacgccgagtttgtgaagaagcagaacaccgccatccat
cgcaacgccggggaggggacgatttgtgaggagcaagaggcctcatcgccttaa
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