Clupea harengus (Atlantic herring): 105894041
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Entry
105894041 CDS
T09045
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha A-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105894041
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
105894041
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Trypan_PARP
Motif
Other DBs
NCBI-GeneID:
105894041
NCBI-ProteinID:
XP_031416632
Ensembl:
ENSCHAG00000005728
UniProt:
A0A6P8F0H2
LinkDB
All DBs
Position
23:20086606..20115693
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AA seq
1743 aa
AA seq
DB search
MIIMVTILANCFFMTMNNPPPWSKTVEYVFTGIYTFEASIKVLSRGFCVGSFTFLRDPWN
WLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGALVQSVKKMGDVM
ILTVFALAVFALIGLQLFMGNLRNKCIHWPLPGNDTLLDDFNTTLAYNTTVNDTSTFDFK
AYIEDPDNQYFLDGALDALLCGNSSDAGRCPEHYVCMKAGRNPNYGYTSYDSFGWAFLAL
FRLMTQDYWENLFQLTLRAAGKTYMLFFVVVIFLGSFYLINLILAVVAMAYDEQNQATLL
EAKEKEEEFQMLLAQLHNQEHEMLVSSQMTLTSQRSHSRGTNDTRSLQDNDDVIKDCNGR
IVPRFVINRVPSVERCTDDEKSRDSKSIESKHSMMYLEGPGMNKRTASAMTVLTNVMEDL
EEAQRPCPPGWYKFADIFLKWDCFPPWVVFKNWVNFIVMDPFVDLGITICIVLNTLFMAM
EHYPMSPEFDHMLSVGNLVFTGIFTAEMVFKLIAMDPYYYFQVGWNVFDSIIVTFSLVEL
GLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKIAQDCELPRWHMNDFFHSFLIVFRILCGEWIETMWDCMEVAGQTM
CLTVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSAGDDDGENNLQIAIGRITRGVDWLKA
FLAGLVRRYLTKKKLPGEEEDEGVGEDGLPLKHLEKMADGMPDSDILKVPIAKGESDIED
EESDEESDDDEEDDDDDDGKKKGKKLADDDSSVCSTVDYRPPEPEPEPEEESEAEPEEPE
ACFTEDCVRRFPFLDVDITKGNGKKWWNLRRACFTVVEHDYFETFIVFMILLSSGALAFE
DIYLERRRTIKIILEYADKAFTYVFIVEMLLKWVAYGFKTYFTNAWCWLDFLIVDVSLIS
LGANLMGYAELGPIKSLRTLRALRPLRALSRFEGMRVVVNALMGAIPSIFNVLLVCLIFW
LIFSIMGVNLFAGKFYRCINTTTEELFPMDVVNNKSDCLALAYTNEARWVNVKVNYDNVG
LGYLSLLQVATFKGWMEIMYAAVDSREVEDQPSYEINMYMYLYFVIFIIFGSFFTLNLFI
GVIIDNFNQQKQKFGGDVFMTEEQKKYHEAMKKLGSKKPVKPIPRPSNEIQGVVYDLITK
QFFDIFIMILICLNMVTMMVETDDQSPEKEEVLYQINLAFIVVFTGETTLKLFALRHYFF
TIGWNVFDFVVVILSVAGLALSDIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLL
FALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYIKKQAGIDDMFSFETFGSSIVCLFEI
TTSAGWDGLLLPILNSGPPDCDPDVENPGSDVRGNCGNPGMGIMFFCSYIIMSFLVVVNM
YIAIILENFNTAQEESGDALCEDDFEMFYETWEKFDPEATQFLPYERLSEFCHMLLPPFR
IAKPNRLRLIAMDLPICTGDKIHCLDILLAVTQEVLGDTIEMAAMRESIQLKFVMNNPTS
ASFEPITTTVRRKQEEEAVVVLQRAYRAYLFRRGARHAAHLHRHRGQVRPAQDDNQPPEL
EGLIARKMNAFYGSNPELAMALEVKSRPQPANAVVVAAAEPVPPTLQQAELQPPTSARLH
PHPQVHATYPRPPVGHHMVVPVEVTNEVVLHSAPVEVTSEVVLRSARSPLSSEELAALRE
SVV
NT seq
5232 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcatggtcaccattttagcaaactgtttttttatgaccatgaacaacccgccg
ccgtggagcaaaacagtcgaatacgttttcactggtatttataccttcgaggcgtcgata
aaggtgttatcgcgaggcttctgtgtcggaagttttacattcctaagagacccatggaac
tggctggatttcatggtgatcagtatggcgtatctcacggagtttgtcgaccttggcaac
gtgtcggctctgaggacattccgtgtgcttcgagctctgaagaccatcacagtgattccg
ggtttgaaaaccatcgtcggagctctcgtccagtcggtgaagaagatgggcgacgtgatg
attctgacggtgttcgctctcgctgtcttcgccctcatcggtcttcagctcttcatgggg
aacctgcggaacaagtgcatacactggccgctccccggcaacgacaccctcctcgacgac
ttcaacaccaccctggcctacaacaccaccgtcaatgacaccagcaccttcgatttcaag
gcctacattgaagacccagataatcagtatttcttagacggtgccttggacgccctcctc
tgtggtaacagctctgacgctgggcggtgcccagaacattacgtctgcatgaaggctggg
aggaacccaaactatggctacaccagctacgactccttcggctgggccttcctggctctg
ttcagactcatgacccaggactactgggagaacctcttccagctgaccctcagggcggcg
gggaagacctacatgctctttttcgtggtggtcatctttctgggctccttctacctcatc
aacctcatcctggccgtggttgccatggcgtacgacgagcagaaccaggccaccctgctt
gaggccaaagagaaggaggaggagttccagatgcttctagcacagctccacaaccaagag
cacgagatgctggtgagcagtcagatgactctgactagccagcggagtcacagtcgaggc
actaacgacacgcgcagtctccaagacaacgatgacgtcataaaggactgcaatgggaga
atagttccacgatttgtcatcaacagagtaccttcagtagagagatgcacagacgatgag
aagagtagagattcgaagtccattgagtccaagcacagcatgatgtacctggaggggccc
ggtatgaacaagcggacagccagcgcaatgacggtgctcaccaacgtcatggaagacctg
gaggaggctcagaggccgtgcccgcccggctggtacaagttcgccgacatctttctgaag
tgggactgcttcccgccatgggtcgtcttcaagaattgggtgaacttcatcgtgatggac
cccttcgtggacctgggcatcaccatctgtatcgtgctcaacactctcttcatggccatg
gagcactaccccatgagccccgagtttgaccacatgctctccgtcggcaacctggtgttc
accggtatcttcacggctgagatggtcttcaagctcattgccatggacccctactactac
ttccaggtgggctggaacgtctttgacagcatcatcgtgaccttcagcctcgtggagctg
ggtctggccaacgtccagggcctgtcggtgctccgctccttccgtttgatgcgtgtcttt
aagctggccaagtcctggcccaccctcaacatgctcatcaagatcatcggcaactctgtg
ggcgccctgggcaacctgaccctggtcctggccatcatcgtcttcatcttcgccgtggtg
ggcatgcagctgttcggcaagagctacaaggaatgcgtgtgcaagatcgcccaggactgc
gagctgccgcgctggcacatgaacgacttcttccactccttcctcatcgtgttccgcatc
ctgtgcggggagtggatcgagaccatgtgggactgcatggaggtggccggccagaccatg
tgtctcaccgtcttcatgatggtcatggtcataggcaacctggtggtgttgaatctgttc
cttgccttgctgctgagctccttcagcggggacaacctgtcggcaggtgacgacgacgga
gagaacaacctccagatcgccatcggccgcatcacccgcggcgtggattggctgaaggcc
ttcctggccggcctggtgaggcgctacctgacgaagaagaagctgcccggggaggaggag
gacgagggcgtaggggaggacggcctgcccctgaagcacctggaaaagatggcggacggg
atgcccgacagtgacatactgaaagtgcccatcgctaagggtgagtcggatatagaggac
gaggagagcgacgaggagtccgacgacgacgaggaggatgatgatgatgatgatgggaag
aagaaagggaagaagttggcagatgatgactcgtcagtgtgcagtactgtggactacagg
ccgccagaacctgagccagagccagaagaggaatcagaagcggaaccggaagaaccagag
gcctgcttcactgaggactgtgtgcgtcgcttcccatttctggatgtggacatcacgaag
gggaatgggaaaaaatggtggaacctccgcagggcctgtttcaccgtcgtggagcacgac
tactttgagaccttcatcgtcttcatgatcctcctcagcagcggtgccctggcatttgag
gacatttaccttgagcggcgacgaacgatcaaaatcattctggagtacgccgataaagcc
ttcacctacgtcttcatcgtggagatgctgctgaagtgggtggcgtacggcttcaagacc
tacttcaccaatgcctggtgctggctggacttcctcatcgtggatgtgtctctcatcagt
ctcggagctaacctcatgggctacgctgagctgggaccaatcaaatcgctccgtacactc
agggccctgaggcccctaagagcactctcccgctttgaaggcatgagggtggtggtgaac
gcgctaatgggcgccatcccgtccatcttcaacgtgctcctggtgtgtctaatcttctgg
ctgatcttcagcatcatgggggtcaacctctttgccggaaagttctaccgctgcataaac
accaccaccgaggagctcttccccatggacgttgtcaacaacaagagcgactgcctggct
ctcgcgtacaccaacgaggcgcgctgggtcaacgtcaaggtcaactacgacaatgtgggc
ctcgggtacctctccttactgcaagtggccaccttcaagggctggatggaaattatgtac
gcagcagtggattctcgagaggtggaggaccagccctcatacgagatcaacatgtacatg
tatctgtacttcgtcatcttcatcatcttcggctccttcttcaccctcaacctcttcatc
ggtgtcatcatcgacaacttcaaccagcagaagcaaaagtttggaggtgacgtcttcatg
acagaggaacagaagaagtaccacgaggccatgaagaaactgggctccaagaagcctgtc
aaacccatccctagaccgtctaacgagatccagggcgtggtctatgacctcatcaccaag
cagttcttcgacatcttcatcatgatcctcatctgcctcaacatggtgaccatgatggtg
gagactgacgaccagagcccggagaaggaggaggtgctctaccagatcaacctggccttc
atcgtggtcttcactggagagaccacgctcaagctgttcgccctcagacactacttcttc
accatcggctggaacgtgtttgacttcgtcgtcgtcattctctcagtcgctggcctcgcg
ttgtcggacatcattgagaagtactttgtgtcgcccaccctgttccgtgtcatccgattg
gccagaatcgggcgagtgttacgtctgatcagaggtgccaaaggcatcaggacgctgttg
tttgctctgatgatgtcacttcctgcgctcttcaacatcggcttgctgctcttcctcatc
atgttcatcttttccatcttcggcatgtccaacttcgcctacattaagaagcaggccggc
atcgacgacatgttcagctttgagacgttcggcagcagcatcgtctgcctcttcgagatc
accacctcggctggctgggacggtctcttgctcccgatcctgaacagcggcccgccagac
tgcgacccggacgtggagaaccccgggtcggacgtgcggggcaactgcggcaaccccggc
atgggcattatgttcttctgcagctacatcatcatgtccttcctggtggtggtcaacatg
tacatcgccatcatcctggagaacttcaacacggcgcaggaggagagcggagacgcgctc
tgtgaggacgacttcgagatgttctacgagacgtgggagaagttcgaccccgaggccacg
cagttcctgccttacgagcgcctctccgagttctgccacatgctgcttcctcccttccgc
atcgccaagcccaaccggctgcgcctcatcgccatggacctgcccatctgcaccggcgac
aagatccactgcctggacatcctgctggcggtgacccaggaggtgctgggcgacaccatc
gagatggcggccatgcgagagagcatccagcttaagttcgtcatgaacaaccccacctcg
gcctccttcgagcccatcaccaccacggtgcggcgcaagcaggaggaggaggccgtcgtg
gtgctgcagcgggcataccgggcgtacctgttccgccgcggcgcccggcacgccgcccac
ctgcaccggcaccgcggacaggtgcggcccgcccaggatgacaaccagccgcccgagctg
gagggcctcatcgcccgcaagatgaacgccttttacggcagcaaccccgaactggccatg
gccttggaggtgaaatccagaccccagccagccaatgccgtcgtcgtcgccgccgccgag
ccggttcccccgacgctgcagcaggcagagctgcaaccccccacctccgcgcggctgcac
ccccatccccaggtccacgccacctacccccggccacctgtgggccaccacatggtggtg
cccgtggaggtgaccaatgaggtggttctgcactcggcgccagtggaggtgaccagtgag
gtggtgctgcgctcggcccggtctcccctctccagcgaggagctggcagcgctacgggag
tcggtggtataa
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