Clupea harengus (Atlantic herring): 105896186
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Entry
105896186 CDS
T09045
Name
(RefSeq) dermatan-sulfate epimerase-like protein
KO
K01794
chondroitin-glucuronate 5-epimerase [EC:
5.1.3.19
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00532
Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
char01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
105896186
Enzymes [BR:
char01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.19 chondroitin-glucuronate 5-epimerase
105896186
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Gene cluster
GFIT
Motif
Pfam:
Sulfotransfer_3
Sulfotransfer_1
DUF4962
Motif
Other DBs
NCBI-GeneID:
105896186
NCBI-ProteinID:
XP_031439994
Ensembl:
ENSCHAG00000023996
UniProt:
A0A6P8GLH4
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Position
17:complement(24350113..24356364)
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AA seq
1209 aa
AA seq
DB search
MAEKGIQHFIFLVYLFATGDAFSGIFNASDKDFFSDYGQLKLTQDRVPELRKLQATNPHP
NLYFNQADIQVMRQRSTTTHSHIFKVIRAAVLTMLSSPPLYMPPARHEEFSSKWNEIYGN
NLAPLALYCLLTPEDSAALQFLLKFMDRMAEYPDWKVTSAPNDEVPMAHSLTGFATAFDF
ISSNLDQQRRDLYLRRIRTETEELYETSKYRGWGKQFLQNHQTTNILAILTGAIVVGTHD
DPESMVWKQVSVNYMEKTMFLLNHVVDGSLDEGVAYGSYTAKSITQYVFLAQRHFNIDNT
QNNWLRNHFWFYYATLLPGFQRTVGIADSNYNWFYGPESQLVFLDTFVMKNGTGNWLAQQ
IRKHRPKDGPMGQSSAQRWTTLHTEFIWYDAHLTPQPPQGYGTPRMHIFSNWGVVTYGAG
LPNNQGNTFVSFKSGKLGGRAVYDIVHAKPYTWVDGWNSFNPGHEHPDQNSFTFAPNGQV
FVSEALYGPKYSYLNNVLVFSPSPSSQCNAPWEGQLGECGKWLRWTDEGVGESAGEVVAA
SSHQDLVFVSGESAPAYSSAMRLKSVYRALVLLNSQTLLVIDHVEKREDSPVNTLSAFFH
NLDIDFKYVPYRFMDRYSGALMDVWDAHYKMFWFDSQGFSPDTRIQEAEQAAEFKKRWTQ
FINVTFPMQSTRSRMAYVMHGPYVKVSNCRFIDDSKNGVRLSVIINNTEKIISIATNHRD
IGARSSYLGFGGFAKIEDRHQIVRFGLGAQLIPKQTTVDSQLFDFGFTVNVIAGVILCVA
IGFLTLQRKFYVCFSKLMRYALLSVLLLWIFELLFVSNSCDQLLCGVKWKGVATNPEVSK
QMRLYEQHHFPLPTIVITTLPGSGSDILKHLFYNNTDFVYLRVPTEHLDIPETEFEFDSL
VDACEWSKADAQLGKYKIIQGWLHSLVHDTHLHLQNIPLHEAARVKLSSRSSSSRDRRKR
TRRRELVADARGKVRGSIERDVEYLRELRRHIGEYPNSRVVLNLRSGSWTLKLPFIQEVV
GPSLRAIYVVRDPRAWIYLMLYNSKPSLYALKNIPQHLALMFKENINRDRCPAFAQEYRP
LWRLLSRSETNPVLLLAHLWLAHTSAVLRISATLPEAAYLRVRFEDVVNSPHEAAERIHS
FLGVPVTPSALNQLMFTTSTNLYNLMYEGDISPANINIWRQNLPRKEIRLIEDTCGFLMK
RLGYSRYNS
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaagggcattcaacacttcatatttttggtttacttatttgctaccggagat
gctttttctggtatcttcaatgcatcggacaaagatttttttagtgactatgggcagcta
aaacttacacaggatagagtgccagaactccgaaaacttcaagccactaatcctcatccc
aacctctattttaaccaagcggatatacaagtcatgaggcaaaggtccactactacacac
agccacatcttcaaagtcatcagagcagctgtgttaacgatgctctccagtcctccgctc
tacatgcccccagcaaggcatgaggagttctccagtaagtggaatgagatttatgggaac
aatttagcacctctggcactgtattgtttactgactccggaggactccgctgcccttcag
tttctgctcaagtttatggaccgcatggcggagtatccagactggaaagtcacgagtgcc
ccaaatgacgaggtgcctatggctcactcactcactggatttgcaaccgcctttgacttt
atttcttctaatctggaccagcagagacgggatctttatctgaggaggatacgcacagag
acagaggagttgtatgaaacatctaaatacagaggctgggggaagcagtttctacaaaat
caccagaccacaaatatccttgccattctgactggtgctattgtggtcggcacgcacgat
gacccagagagtatggtttggaagcaggtttcagtgaactatatggaaaagaccatgttc
ttactgaaccatgttgtagatggctctttagatgaaggggtggcatatggaagttacaca
gctaagtcaatcactcaatatgtgtttcttgcacagcgccactttaatatagataacaca
caaaacaactggctgcgcaatcacttctggttttattatgctaccttactaccaggcttc
cagaggacagtggggatagctgactccaattacaactggttctatggacctgagagtcag
ctagttttcttggacacctttgtaatgaaaaacggcacaggcaattggctcgcacaacaa
ataaggaagcacaggcctaaagatggtccaatgggccagtcctcagcccagcgctggact
acgctccacactgagttcatttggtacgatgctcatctgaccccccagccccctcagggc
tatggcacaccccggatgcacatcttctcgaactggggggttgtaacgtatggcgcaggt
ttacccaacaaccagggcaacacttttgtctcttttaaatctggcaagctaggcggcagg
gctgtctatgacatcgtccatgccaagccctatacgtgggttgatggttggaacagtttc
aacccaggacatgaacacccagaccaaaactcatttacttttgcccccaatggacaggtg
tttgtatctgaggctctgtacgggcccaaatacagctacttgaacaatgtgctggtgttt
agtccttcccccagcagccagtgcaacgccccctgggaaggccagctcggtgaatgtggc
aagtggttgaggtggacagatgagggcgtcggggaaagtgctggtgaagtggtggcggca
tcgtctcaccaagacctcgtgtttgttagcggtgagtcggccccagcgtattcatccgcc
atgaggctgaagagtgtttacagggcccttgtgctgctcaactcccagactctgttagtg
attgaccatgtggaaaaacgggaagactcaccggtgaacacgctcagtgcattctttcac
aaccttgacattgactttaaatacgtcccctataggttcatggacaggtacagtggagca
ctgatggatgtttgggatgcccattataaaatgttctggttcgatagtcagggtttcagt
ccagacactagaatccaggaggcggagcaggctgccgagtttaaaaaaagatggacgcag
ttcatcaatgtcaccttccccatgcagagtactagaagcagaatggcctatgtaatgcat
gggccctatgtcaaggtgtccaactgtagatttatagacgacagcaaaaacggtgtgcgc
ctttcagtcatcattaacaacactgagaaaatcatctccatagcaactaaccacagagac
ataggggcacgttccagctaccttggttttggcggatttgccaaaattgaagacagacat
caaatagtccgctttggcctgggtgcacaactcatcccaaagcaaactacagttgacagt
cagctatttgactttggattcacagtaaacgtgatagctggggtaatactttgtgttgcc
attggatttctgacactccagagaaagttctatgtgtgcttcagcaaactgatgcgctat
gctctgctctctgttctcctcctctggatctttgagctgttgtttgtctcaaacagctgt
gaccagctactatgtggggtgaagtggaaaggtgtcgccaccaaccccgaggtcagcaaa
cagatgaggctttatgaacagcaccactttcccttgcctactatcgtcataacaaccctg
cctggctcagggtcagacattcttaagcaccttttctataacaacacagattttgtctac
ctgcgagttcctacagagcacctagatattccagagactgagtttgagtttgactccttg
gtggatgcttgtgagtggtccaaagccgatgcccagctgggaaagtacaaaatcatccag
ggctggctgcactcgctggtccatgacacccatctgcacctgcagaacattccactccac
gaggcagcccgagtgaagctatcctccaggtcgagctcctcaagggaccggaggaagagg
accagacggagggagctggtagctgatgcgagggggaaagtgcggggaagcattgaacgg
gatgttgagtatttgcgtgagctacgcaggcacattggggagtatcctaattcacgggtg
gtgctaaacctcagaagtggcagttggacattaaaactacccttcattcaggaagtggtg
gggccatctctgagggctatttatgtggtcagggaccctcgggcctggatctacctaatg
ctctataacagtaagccaagcctgtatgcccttaaaaacattccacagcacttggccctg
atgttcaaagagaacatcaacagggacagatgcccagcgtttgcccaggagtatcggcct
ctctggcgactcctttcacgctcggagacaaaccctgtcctgctgcttgcccacctgtgg
ctggcgcacacctctgctgtcctccgcatcagcgccacgctgccggaggcggcatacctg
cgggtgaggttcgaggatgtggtgaactctccacacgaggcggctgagaggattcactcg
ttcctcggtgtcccagtaacaccctcagcactaaaccaactgatgttcaccacttctaca
aatctgtacaatttaatgtatgaaggggacatatcaccagccaacatcaatatatggagg
cagaatttgcctcggaaagaaatcagactcattgaagacacatgtggctttttgatgaag
aggcttggatattccaggtataacagttaa
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