Clupea harengus (Atlantic herring): 105896227
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Entry
105896227 CDS
T09045
Symbol
trpc5a
Name
(RefSeq) short transient receptor potential channel 5a
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
char
Clupea harengus (Atlantic herring)
Brite
KEGG Orthology (KO) [BR:
char00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
char01009
]
105896227 (trpc5a)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
char04040
]
105896227 (trpc5a)
Protein phosphatases and associated proteins [BR:
char01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
105896227 (trpc5a)
Ion channels [BR:
char04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
105896227 (trpc5a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
Ank_5
PKD_channel
LHD_TRPY1
DUF4398
Motif
Other DBs
NCBI-GeneID:
105896227
NCBI-ProteinID:
XP_012678419
Ensembl:
ENSCHAG00000016821
UniProt:
A0A6P8FWI0
LinkDB
All DBs
Position
8:complement(13749930..13784985)
Genome browser
AA seq
1020 aa
AA seq
DB search
MNPMAQLYYKKASYSPYRDRIPLQIVRAEAELSPAERAYLTAVEKGDYAGVKHALEEAEI
YYNINVNCLDPLGRSALLIAIENENLEVMELLLCHGVLVGDALLYAIRKEVVGAVELLLS
YRRPSGEKQVPSMMMDSQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTVPRPHQIRCD
CVECVSSSEVDSLRHSRSRLNIYKTLASPSLIALSSEDPILTAFRLGWELKELSKVENEF
RQEYEELSHQCKLFAKDLLDQARSSRELEIILNHRDDHSEELDPRECRDLAKLKLAIKYH
QKEFVAQPNCQQLLATLWYDGFPGWRRRHWVVKLVTCFVIGLLFPVFSLVYLLAPKSPLG
LFIKKPFIKFICHTASYLTFLFLLLLASQHIVRTDLHVQGPPPTIVEWMILPWVLGFIWA
EIKEMWDGGFTEYVHDWWNLMDFAMNSLYLATISLKMVAYFKYNSSRPREEWEMWHPTLI
AEALFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQ
LYFYYETQAADEPNNCKGIRCVKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFT
EFVGATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGATL
PPPFNIIASPKSVWYLCVWVHSKLCAKGQPSPEDHKKHENFKEFTERHADNLIQNQHYQE
VIRSLVKRYVAAMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRKPPRRTYSSSS
EATQQDDDLAEDLKTKNPKGVSFSLSSDKRSRDSEFGVSALFRSMSGSRDGDVAANDKKP
KSNGLRKFTSSSSFIRNGGRLQRFSRSKKDSLRRLGLLFSRMNGHLPEPASSSRSAYSIS
DGVDLRMPSDPQVTRSEMHLHQLGGLRLDEMGAHADAHHVSLQQQRQQRQSNGRDGALLL
PVAGQPLALGPLHCASSITASSSRLLSSSEDMYEGWVGPCDSLGSISWTGDQEESVTTQL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccatggcgcagctgtactacaagaaggcgagctactctccctaccgcgaccgc
atcccgctgcagatcgtgcgggcggaggccgagctgtcgccggcggagcgggcgtacctg
acggcagtggagaagggcgactacgccggcgtgaagcacgctctggaggaggccgagatc
tactacaacatcaacgtgaactgcctggacccgctgggccgcagcgcgctgctcattgcc
atcgagaacgagaacctggaggtgatggagctgctgctgtgccacggcgtgctcgtgggc
gacgcgctcctctatgccatacgcaaggaggtggtgggcgccgtcgagctgctgctctct
taccggcgccccagcggagagaaacaggtgccctccatgatgatggactcgcagttctcc
gagttcacgccagacatcacgcccatcatgctggcggcgcacaccaacaactacgagatc
atcaagttgctggtgcagcgcaaggtgacggtgccgcggccgcaccagatccgctgcgac
tgcgtggagtgcgtgtccagctcggaggtggacagcctgcgccactcgcgctcccgcctc
aacatctacaagacgctggcctcgccgtcgctcatcgcgctctccagcgaggaccccatc
ctcaccgccttccgcctgggctgggagctcaaggagctgagcaaggtggagaatgagttc
cggcaagagtacgaggagctgtcgcaccagtgcaagctcttcgccaaggacctgctggac
caggcgcgcagctcgcgcgagctggagatcatcctcaaccaccgcgacgaccacagcgag
gagctggacccgcgcgagtgccgcgacttggccaagctcaagctggccatcaagtaccac
cagaaggagttcgtggctcagcccaactgccagcagctgctggccaccctgtggtacgac
ggcttcccgggctggcgccgccgccactgggtggtcaaactggtcacctgcttcgtcatc
gggctcctcttccccgtcttctccctggtgtacttgctggcgccaaagagcccgctgggc
ctcttcatcaagaaacccttcatcaagtttatctgccacaccgcctcctacctcaccttc
ctcttcctcctgctgctcgcctcccagcacatcgtccgcaccgatctgcacgtgcagggc
cctcctcccaccatcgtggagtggatgatcctgccctgggtgctgggcttcatctgggca
gaaattaaagagatgtgggatggtggcttcaccgagtacgtccacgattggtggaacctc
atggattttgccatgaattcactctacctggccactatatctctcaaaatggtcgcttac
ttcaagtacaacagctctcgtccgcgtgaggagtgggagatgtggcaccccacgctcatc
gctgaagccctgttcgctatcgccaacatcttcagctcgctgcgcctcatctccctcttc
acggccaactcgcacctgggcccgctgcagatctcgctgggacgcatgctgctagacatc
ctcaagttcctcttcatctactgcctggtgctgctggccttcgccaacggcctcaaccag
ctctacttctactacgagacgcaggcggccgacgagcccaacaactgcaagggcatccgc
tgcgtgaagcagaacaacgccttctcgacgttgtttgaaacactgcagtcacttttttgg
tcagtgtttgggctcctcaacctgtacgtcaccaacgttaaggcacggcacgagttcacc
gaatttgtgggtgctaccatgtttggcacttacaatgtcatctccctggtggtgttactt
aacatgctcattgccatgatgaacaattcctaccagctcatagcggaccacgctgacatt
gagtggaagtttgctcggacgaagctgtggatgagctacttcgacgagggcgccacgctg
cctccccccttcaacatcatcgccagccctaaatcggtgtggtacctctgtgtgtgggtg
cacagcaagctgtgtgcgaagggacagcccagcccagaggaccataagaagcatgaaaac
ttcaaggaattcacggagcgtcatgctgacaaccttattcagaaccagcactaccaggag
gtaattaggagcctggtgaagaggtatgttgcagcaatgatccgcagtgcaaagacggat
gaaggcctgacagaggaaaacttcaaagagttgaagcaggacatctccagcttccgctat
gaggttctggatctgctgggcaaccgcaagccgccccgccgcacctactcctccagtagt
gaggccacgcagcaggatgacgacctggccgaagacctcaaaaccaaaaaccccaagggg
gtctccttcagcctctcctctgacaagaggtcccgggactcggagttcggcgtgtcggca
ctattccgctccatgtcaggttcgagagacggtgatgtggcggcgaacgacaaaaaacca
aagagcaacgggctgcgcaagttcacgtcctcgtcctcattcatacgcaatggcgggcgc
ctacagcgcttctcccgctccaagaaggactcgctgcggcggctgggcctgctgttttcc
cgcatgaacggccacctgcctgagcctgccagctcctcgcggtccgcctacagcatctcg
gatggggtggacctccgcatgccctcggacccgcaagtcacgcgcagcgagatgcacctc
caccaactgggggggctgcgtctggacgagatgggggcgcacgctgacgcgcatcacgtg
tctctgcagcagcagcggcagcagaggcagtccaatgggcgggacggcgcgctgctactg
cccgtcgcggggcagcccttggccctgggccctctgcattgtgcttccagcatcacggca
tccagctcgcgcctgctcagctccagcgaggacatgtacgagggctgggtggggccctgc
gacagcctggggtccattagctggacaggggatcaggaggagtctgtaaccacccagctc
tga
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