Clupea harengus (Atlantic herring): 105896535
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Entry
105896535 CDS
T09045
Symbol
trim63a
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM63a
KO
K10655
tripartite motif-containing protein 63 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
char00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105896535 (trim63a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
char04121
]
105896535 (trim63a)
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105896535 (trim63a)
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
105896535 (trim63a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_2
zf-B_box
zf-RING_5
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
DUF1664
zf-RING_11
Sina_RING
zf-RING_10
DUF2225
Motif
Other DBs
NCBI-GeneID:
105896535
NCBI-ProteinID:
XP_012678754
UniProt:
A0A6P3VR47
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All DBs
Position
21:1181621..1183478
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AA seq
354 aa
AA seq
DB search
MEIQTGQIVRPPSPMEDLEKQLSCPICLEMFTKPVVILPCQHNLCRGCANDLYDSRNPYH
YSGGIFRCPTCRFEVVLDRHGVYGLQRNLLVENIIDIYKQQLESSSNNLEPPLKPKDTKQ
SMCKEHEDEKINIYCITCQIPTCSMCKVFGQHKDCEVSTLDSVYQGQKTELRNSLDMLVA
GNSSLQATLNQMDDNCKIIQENAELQKRHLGEQFDLLYATMEERKGQLLDSITQEQDEKV
AVLRSLVEQYKGQLEASTRLMDTASQSMNNTNVPEFLVSVKTLITDAKDTAKRSLLERPE
PGFEKMDHFTLFTEDVEVILAQMDFGIDEEEFEECEENEEEEEEEEEEEEEEEE
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atggagatccaaactggtcagatagtccgacctccgagccccatggaggacctggagaag
cagctgagctgcccaatctgcctggaaatgttcaccaagccggtggtcatcctgccttgc
cagcacaacttgtgccgtggctgtgccaatgacctctacgactcccgcaacccctaccac
tactccgggggcatcttccgctgcccaacctgccgctttgaggtggtgctggaccggcac
ggcgtctacggcctgcagaggaatctgctggtggagaacatcattgacatctataagcag
cagctggagagcagcagcaacaaccttgagccaccactgaagccaaaagacaccaagcag
tccatgtgtaaagagcacgaggatgagaagatcaacatctactgtatcacctgccaaatt
cctacatgctccatgtgcaaggtgtttggccagcataaggactgtgaagtctccacactg
gatagtgtctaccaggggcagaagacagagctcaggaactccctggacatgttggtggcc
gggaacagcagtttgcaggccacactcaaccagatggatgacaattgcaagatcatccag
gagaatgcggagctgcagaagaggcatcttggggagcagtttgatctgctgtatgccacc
atggaggaacgcaagggtcagctgctggacagcatcacacaggagcaggacgagaaggtg
gccgtgctgcggtcgctggtggagcagtacaaggggcagctggaggccagcaccaggctg
atggacaccgcctcccagagcatgaacaacaccaacgtgccggagttcttggtctctgtg
aagacgctgatcactgatgctaaagatacagccaagcgatccctcctggaaaggcccgaa
cctggctttgagaagatggaccatttcacgttgttcactgaagatgttgaagtaatcctt
gcacaaatggactttggaattgatgaggaagagtttgaggagtgtgaagaaaatgaagag
gaggaggaggaggaggaggaggaggaggaggaagaagaggaatga
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