KEGG   Clupea harengus (Atlantic herring): 105900360
Entry
105900360         CDS       T09045                                 
Symbol
aff4
Name
(RefSeq) AF4/FMR2 family member 4 isoform X3
  KO
K15185  AF4/FMR2 family member 4
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    105900360 (aff4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:char03021]
    105900360 (aff4)
Transcription machinery [BR:char03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     105900360 (aff4)
SSDB
Motif
Pfam: AF-4 AFF4_CHD AF4_int Peptidase_S64 Mrr_N
Other DBs
NCBI-GeneID: 105900360
NCBI-ProteinID: XP_012683100
Ensembl: ENSCHAG00000010829
UniProt: A0A6P3VXM7
LinkDB
Position
8:complement(17085885..17113047)
AA seq 1156 aa
MASQMGNMNREDRNVLRMKERERRNQEIQQGGEAFPANSPLFPEPYKVSSKEDKLSSRIQ
SMLGNYDEMKETIGETPISKLMSKGSGSSSSEEKSGQGLYGEQRGGGGGSSGGGGQSSKW
TPVVSAASTSSSSSQLQKRSGLQGSQRGAGGSSSGSGSSQRHEKDYSSGSGKKSSKHSSD
QSKGHTSSPTKGSSISSSSHSRSMGSEHHGKDRYRKSPRDREREREPSWDSPSRVHTFAT
GQHTTQAFPPSLMTKPSSMLQKPTAYVRPMDGQETAEPKGSTEMYSGQSHSSSAGEMKSN
GKASLAKLKIPTPSVEGSMTGDSSCVDEILKEMTQSWPPPLTAIHTPCKTEPSKFPFPTK
DSQHSSFSSGGHSKRSSAGKGSSSTHASKPCEGDQANMLEDDLKLSSSEDSDGEQDSTKT
APRSAPQSQVAEVAENSREDSSSHTGSESSSASDSESESSSSESETNEPPRAASPEPEQP
TANKWQLDNWFKKVNKFSPASPVDNNVPTKYRKEGREQGSGRGYGGQSGSKDASAPTQGR
DLRPAQKGSENGRGRQKSPAQSDSSAGQRRTVGKKQPKKSEKPPVVEEPKGGLMVESETP
QDIPTPRNKAPSKGPRKPNIKKEPKSPRQAQDKRKTKAPTKTPQKSREFVDTDTDSSDSE
GNESIPSSSQTPKYQESIRTPVCVFSPMEEKELLSPLSDPEDRFPTRQVLMVKIDLSLLS
RVPGRLYKELDQIKTERDGGGGDGNRDGKDLQKPPSEKTSSKGKRKHGKNEDESSKPESK
KSRMEDKASSHHKSSSKESSKRGPEKEKELAPSPSIGNLQRTPKAEHQSRKRTTSQSSTS
LSSGASSGKEGGHSTKNGPASKHRREDKQGRSTRDGKEKSSKMSESQLSATQQSECSKSR
TKLLFEDRVHSADHYLQEAKKLKHNADALMDRFEKAVYYLDAVVSFIECGNALERSAQEA
KSPFPMYAETVELIKYTMKLKSYMAPDATSADKRLAVLCLRCQSLLYLRLFKLRKESALK
YSKTLTDHLKNSLNTNAPSPGNKAAGMPSPVSPKLSPGSAGSYSSSSSNPSSSSSVNIPQ
RIHQMAASYVQVTSNFLYATEVWDQAEQLASAQKEFFIELEKMMGALIFNTSSMTDLVRY
TRQGLAWLRQDAKLVA
NT seq 3471 nt   +upstreamnt  +downstreamnt
atggcctctcagatgggcaacatgaaccgtgaagaccggaatgtgctccgaatgaaagaa
agagaaaggcgaaatcaagagatccagcaaggaggagaggccttcccagctaactcccct
ctctttcctgagccttataaagtttctagcaaagaagacaaactatccagccgtatccag
agcatgctaggaaactacgacgagatgaaagaaacaatcggtgaaacccccatttccaaa
ctcatgagcaaaggttcaggttcctcctcttccgaggagaagtcaggccaaggactatat
ggcgagcagcgtggaggaggtggcggcagcagcggaggtggcggccagagcagcaaatgg
actcctgtagtctccgcggccagcacctcctcgtcttcctcccagctgcagaagcgctct
gggctccagggcagccagcgtggagccggaggcagtagcagcggcagcggcagcagccaa
agacacgagaaagactacagtagtggcagcggcaagaaatccagcaagcacagctcggac
cagtccaagggacacacgtccagcccgaccaagggctcgtccataagctcgtcgagccat
tcccgctcgatgggctccgagcaccacggcaaggaccgttaccgcaagtcgccgcgagac
cgtgagcgtgagcgtgagcccagctgggactcgccgtcgcgcgtgcacaccttcgccacg
ggccagcacacgacccaggccttcccgccctcgctcatgaccaagcccagctccatgctg
cagaagcccacggcctacgtgcggcccatggacggccaggagacagccgagcccaagggc
tccacggagatgtacagcggacagtcgcacagcagtagcgccggagagatgaagtccaac
ggcaaagcctcgctcgccaagctcaagatccccacgccatctgtagaggggtccatgacg
ggagattcaagttgcgttgatgaaatcttaaaggaaatgactcagtcctggcctccccca
ctgacggccattcacactccctgcaagacggagccatccaaatttcccttccccacaaag
gactcccaacactcaagtttcagcagtggaggacacagcaagaggagcagcgcagggaag
ggctcgtccagcactcatgcctctaaaccctgtgagggcgaccaggccaacatgctggag
gacgacctgaagcttagcagcagtgaggacagtgacggcgagcaggactccaccaaaacc
gccccccggagtgccccccaaagtcaggtggcggaggtggcggagaactctcgggaggac
tccagcagccacacgggctctgagagcagctcggcctcggacagtgagagtgagagcagc
tccagtgagagtgagaccaacgagcctccacgcgctgcttcaccagagccggagcagcct
acagccaataagtggcagctggataactggttcaagaaggtcaacaagttttccccagcg
tcaccagtggacaacaatgtgcccaccaagtacaggaaagagggccgggagcaggggtcg
gggcgagggtacggtggtcagagtgggtcaaaagacgccagcgcgcccacacagggccgg
gacttgcggccagcccagaagggctctgaaaatggccgggggcggcaaaagtcgcctgcc
cagagcgatagcagcgcggggcagcgaaggactgtgggtaaaaaacaacccaagaagtca
gagaagccccctgtggtggaggagcctaagggggggttgatggtggagagcgagaccccg
caggacattcccacgccccgaaacaaggcccccagcaaagggccccgcaaacccaatatc
aagaaggagcccaagtcgccgcggcaagcacaggacaagcgcaagaccaaagcgcccacc
aagacgccgcagaagtcccgagagtttgtggacacggacacggactcgtccgactcggaa
ggcaatgagagcatcccgtcctcgtcgcagacgcccaagtaccaggagagcatccgcacg
cctgtctgcgtcttctcgcccatggaagagaaggagctgctgtcgccgctcagcgatccg
gaggaccgcttcccaacccggcaggtgctaatggtgaagatcgacctgagcctgctctcc
cgcgtccccggcagactctacaaggagctggaccagatcaagacggagagggatggcggc
ggcggcgatggaaacagagatgggaaggacctccagaagccgcccagtgagaagacctcc
agcaaggggaagaggaagcacggcaagaatgaagatgagagctcgaagccagagagcaaa
aaatccagaatggaggacaaggcctcatcgcatcacaagtccagcagcaaagagtcgtcc
aagcggggcccggagaaggaaaaggagttggcgccctcgccctccattggtaacctgcag
cgcacacccaaggcggagcaccagagccggaaacgcaccaccagccaatcgtccacctcc
ctttccagcggagccagtagtggcaaagagggcggacacagcacaaagaacggccccgcc
tccaagcacaggagagaggacaagcagggcaggagcaccagggacggaaaggagaaatct
tctaagatgagtgagagccagctgtctgcgacacagcagtctgaatgctccaagtcaaga
accaagcttctgtttgaagaccgggtgcattctgccgatcactacctacaggaggccaag
aagctgaaacacaacgctgatgctttgatggacaggtttgaaaaggctgtgtactacctt
gacgccgtggtgtccttcattgagtgtgggaatgccttggagaggagtgcccaggaggcc
aagtctccgttccctatgtacgcagagactgtggagctcatcaaatacactatgaaactc
aaaagctacatggccccagacgccacatctgcagacaaaagactggccgtcctctgtctg
aggtgtcagtctcttctctaccttcggctcttcaagctgaggaaggagagcgcactcaag
tactccaaaacactcaccgaccacttgaagaactccttaaataccaacgcgccgtctccg
gggaataaagcggcgggcatgccgtctccggtgtcccctaagctgtccccgggcagcgcc
ggcagctactcctccagcagctccaaccccagcagctcctcgtctgtcaacatcccccag
cgcatccaccaaatggccgccagctacgtgcaggtcacctccaacttcctgtacgccacc
gaggtgtgggaccaggcagagcagctagccagcgcgcagaaagagttcttcattgagctg
gagaagatgatgggggcgctgatcttcaacacgagcagtatgaccgatctggtgcgctac
actcgccagggcctcgcctggctgcgtcaggacgccaagctggtcgcgtag

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