KEGG   Clupea harengus (Atlantic herring): 105901871
Entry
105901871         CDS       T09045                                 
Symbol
tardbpb
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
  KO
K23600  TAR DNA-binding protein 43
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105901871 (tardbpb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105901871 (tardbpb)
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     105901871 (tardbpb)
SSDB
Motif
Pfam: TDP-43_C TDP-43_N RRM_1 RRM_7 RRM_PARP14_3 RRM_3 TMA7
Other DBs
NCBI-GeneID: 105901871
NCBI-ProteinID: XP_012684830
Ensembl: ENSCHAG00000008909
UniProt: A0A6P3VYQ5
LinkDB
Position
5:18794939..18799076
AA seq 421 aa
MEMAECYIRVAEDENEEPMEIPSEEDSTVLLSSVSAQFPGACGLRFRSPVSQCMRGVRLV
EGILHAPENGWQNLVYVVNYPKDNKRKMDEMDAALASKMKRGDQKTSDLIVLGLPWKTSE
QDLKDYFATFGEVIMVQVKRDVKTGNSKGFGFVRFTEYETQNKVMSQRHMIDGRWCDCKL
PNSKAFSPTDYMFDQQAGPDEPQRCRKVFVGRCTEDMTADDLRQFFMQYGEVTDVFIPKP
FRAFSFVTFADDQVAAALCGEDLIVKGVSVHISNAEPKHNNSRQMMERAGRFGNGFGQGF
GSSRSIGGGSSSSTMGNFGNFNLNPAMMAAAQAALQSSWGMMGMLASQQGGQSTTSGTST
SGPASSTRGETQAYSSGGNSNYSTNSASLGWGTGSNSTTSGSGFTSGFGSSMESKSSGWG
M
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggaaatggccgaatgttatattcgcgtggcggaagatgagaatgaggagcccatggaa
atcccatcagaggaagacagcaccgtgttgctgtcgagcgtctccgcacagtttccagga
gcttgcggcctacgtttccggagcccagtgtcccagtgcatgcgaggggtccgtttagtg
gaaggaattcttcatgctcccgagaatggatggcaaaatctggtctatgtcgtcaactat
cctaaagataacaaaaggaagatggatgagatggatgctgcattggcctcaaaaatgaag
agaggggatcagaagacctcagacctgattgtgttggggcttccatggaaaacctcagaa
caggacctgaaagactattttgccacttttggtgaagtcatcatggtccaggtcaagcgt
gatgtgaaaactgggaactcaaagggttttggattcgtgaggttcacagagtatgaaact
cagaacaaagtgatgtcacagcgtcacatgattgatggaagatggtgtgactgcaagctc
cccaattccaaggcctttagtccaacggattatatgtttgaccaacaggctggtcctgat
gagcctcagaggtgcaggaaagtgttcgtgggccgatgcaccgaggacatgactgccgat
gacctgaggcagttctttatgcagtatggcgaggtcactgatgtgttcatcccaaaacct
ttccgtgctttttcctttgtcacctttgctgatgaccaggttgccgcagcactgtgtggt
gaggacctgatcgtcaaaggagtcagcgtgcacatctccaatgctgagcctaagcataac
aatagtaggcaaatgatggagagagcaggccgctttggcaatgggtttggccaggggttt
ggcagtagccgcagtataggcgggggcagcagctctagcaccatgggtaactttggtaac
ttcaacctcaacccggccatgatggccgcggcccaagcagctctacagagcagctggggg
atgatgggtatgctggccagccagcagggtggtcagtccactacctctggtaccagcact
agcgggccggccagctccactcggggggaaacccaggcatacagttcaggcggcaacagt
aactacagtaccaattcagcgagtctggggtgggggaccggctctaactccacaactagc
gggagtgggtttacctctggctttggctccagcatggagtccaagtcttcaggttggggt
atgtaa

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