Clupea harengus (Atlantic herring): 105902089
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Entry
105902089 CDS
T09045
Symbol
hlcs
Name
(RefSeq) biotin--protein ligase isoform X1
KO
K01942
biotin---protein ligase [EC:
6.3.4.9
6.3.4.10
6.3.4.11
6.3.4.15
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char00780
Biotin metabolism
char01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
char00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00780 Biotin metabolism
105902089 (hlcs)
Enzymes [BR:
char01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.9 biotin---[methylmalonyl-CoA-carboxytransferase] ligase
105902089 (hlcs)
6.3.4.10 biotin---[propionyl-CoA-carboxylase (ATP-hydrolysing)] ligase
105902089 (hlcs)
6.3.4.11 biotin---[methylcrotonoyl-CoA-carboxylase] ligase
105902089 (hlcs)
6.3.4.15 biotin---[biotin carboxyl-carrier protein] ligase
105902089 (hlcs)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BPL_LplA_LipB
BPL_N
BPL_C
Motif
Other DBs
NCBI-GeneID:
105902089
NCBI-ProteinID:
XP_012685073
Ensembl:
ENSCHAG00000009755
UniProt:
A0A6P3W0X6
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All DBs
Position
8:complement(29502741..29526787)
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AA seq
916 aa
AA seq
DB search
MLITLCYVYLWVRFQKFYTPVICRTVHRLCGSTNLSSFTFCAVKPDQCQTGEQTSKQHKS
TLPEDTQVFLKLGNKAIYITEPQACDDLTKWTLLIGSSLFCRPRIENIAFIIEAASGPAG
GQSLNSNKKVLQWSDYCHPLARSPGLPFRAVAETSVENFSRLGVAFMEDRLQMENGLVPE
KIVSVLLQESALRELIEKRQSASSKQTEQRVQPLPLNTPAAIVLSEPSPREQEVDGVPQG
SELTEHRKGSLNLSVASEPTAQRTSEGECRDSHGKEPKAAGHRHMEGHHLHLSSCHECLE
LEHSTILSVKYASIENIPDLPHDYDCVEDSDEGTEEVECFAGQSKRVNVSGKPPNVLVYT
GSCMERFDAIRCLLAECIDTDSYALYPLRPQQALSEPWLESTLLLVLAADEALTPQLQER
FLAYLDKGGKVLGLSSTFSPAGLNLVVKEAQRNQICRLSFTKADSTELELSALASGRVYV
REPADCVTGEVELWGELHGDAKDMVIVRVTHGACGGEAVLCQVRLETAPDSQHVQSSDGF
EVLKMSNALRYEVLTEILTSLGLSCELSQMPPPSPVHVLSTCPELKGRFLKWLESQMDKE
GMFRSPKTCLKLSSSAELQTDLPEGVLALLPDPPTELSSEQFNLQAYSHHLHTHTLGRTL
LFAEVTPTTMDLLEGLMLQLPEEMGLIAVALRQTKGRGRGGNAWLSPLGCAMFTLHVQVP
ISSSLGQSIPFLQHLAALAVVEAVCTLPGYEKLDLRLKWPNDIYYSNLMKLGGVLVNSTV
MGPTFHLLIGCGFNVSNSNPTICINDLVVQHNREHGSNLEPLNPTHLIARTVTHLEKLIA
DFQEKGPAAVLPLYYRRWVHSGTRVKLWSEDGPEAEVVGLDDHGFLQVKSEKEVVSVQPD
GNSFDMLRNLIMTKHS
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcttataacgctgtgttacgtctacctctgggtgcgttttcagaagttttacacgccg
gtcatttgcaggactgtacatagattgtgcgggagcaccaaccttagcagtttcactttt
tgtgctgtaaagccagaccagtgtcagacgggggagcaaacttctaagcaacacaagtca
accttaccagaagacacccaggttttccttaagctgggaaacaaggctatatatatcacc
gaaccacaggcttgtgatgacctcaccaagtggactctcttaataggatcttccctgttc
tgtcgtccaaggatagagaacattgctttcatcatagaggctgcatcaggacctgctggg
ggccaatctcttaactcaaataaaaaagtgctgcagtggtctgattactgtcaccccttg
gcccgcagccctggactccccttcagggccgtagctgagacgagtgtggagaactttagc
cgcctgggggtggcgttcatggaagatcggcttcagatggaaaatggtctcgttccagaa
aaaatagtctctgttctgcttcaagaatctgccctcagggaacttatcgagaagagacaa
tcagcgagcagcaaacagactgaacagcgcgtccagcctctccctctaaatactcccgct
gcaatcgtactctcagaaccttcaccgagagagcaggaagtggacggtgtcccacagggc
tcagagctgaccgagcacagaaaggggagcctgaacctctcggttgcttcggagcccacg
gctcagaggaccagtgaaggagagtgcagggattcgcacggtaaggagcccaaggcagca
ggacaccgtcacatggaaggccaccacctccacctgtccagctgccacgagtgcctggag
ctggagcacagcaccatcttgtctgtgaagtatgcctcgatagagaacattccagacctg
ccccacgactatgactgtgtggaggacagcgacgaaggcacagaggaagtggagtgcttt
gcaggtcagagcaagagggtcaacgtcagtgggaagccccccaatgttcttgtgtacaca
gggagctgcatggagagattcgatgcgatccgctgccttcttgctgaatgcatagacact
gacagctacgccctgtacccactacggccccagcaggccctcagcgagccttggctggag
agcacgctgctgttggtgctagcagcagatgaggccctgaccccacaactacaagagcgc
ttcctggcatacctggacaagggagggaaggttttgggtctctcctccaccttttccccg
gcaggccttaatctggtggtgaaggaagcccagagaaatcagatctgtaggctgagcttc
accaaggccgacagcacggagctagagctgagtgcgttggccagcgggagggtgtacgtg
cgggagccagccgactgcgtgacgggcgaggtagagctctggggagaactgcacggagat
gccaaggacatggtgatcgtcagggtgactcacggagcatgtggtggggaagctgtgttg
tgtcaggtgcgtttggagactgcaccagattcacagcatgtgcagagctccgatggcttt
gaagtgctgaagatgagtaatgcccttcgctacgaggtgctaacagagatcctcacgtcc
ctgggtctgagctgtgagctgagccagatgccccccccgagccccgtgcatgtcctctcc
acctgcccggagttgaaaggccgcttcttaaagtggctggagagccagatggacaaggag
ggcatgttcaggtctccaaagacctgtctgaagctctcgtcaagtgcagaactccagaca
gacctgcctgagggggtgctcgccctgctccctgacccccccacagagctctcgtcagag
cagttcaacctgcaggcctacagccaccacctgcacactcacaccctgggtcgcaccctg
ctcttcgccgaggtcacccctaccaccatggacctgttggaagggttgatgcttcagcta
ccagaggaaatggggttaatcgccgtagctcttcgtcagacaaagggcagaggccgtgga
ggtaacgcctggctgagccccctgggatgtgccatgttcaccctgcacgtgcaggtcccc
atcagctcgtctctgggccagagcatccccttcctgcagcacctggcagccctggctgtg
gtggaggccgtgtgcactctgccaggatatgagaaactcgacttacggctgaagtggcct
aatgatatttactacagtaacctaatgaaactgggtggcgttctggtgaactcaacagtt
atgggaccaaccttccatcttctcataggttgtggcttcaatgtcagtaacagcaaccca
accatctgtatcaatgacctggtggtgcagcataaccgggagcatggctcgaacctggag
cccctgaaccccacacacctcatcgcccgcacagtcacccacctggagaagctcatcgcc
gacttccaagagaagggtccggcggccgtgctgcccctctactacagaagatgggtccac
agtggaactcgggtgaagctgtggagcgaggacggcccagaggcggaggtggtagggctg
gacgaccacggctttctccaggtgaagtcggagaaggaggtggtgtccgtccagcctgac
gggaactccttcgacatgttgaggaacctgatcatgaccaagcacagctag
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