Clupea harengus (Atlantic herring): 105902465
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Entry
105902465 CDS
T09045
Name
(RefSeq) TNF receptor-associated factor 2 isoform X2
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
char
Clupea harengus (Atlantic herring)
Pathway
char04010
MAPK signaling pathway
char04137
Mitophagy - animal
char04141
Protein processing in endoplasmic reticulum
char04210
Apoptosis
char04217
Necroptosis
char04621
NOD-like receptor signaling pathway
char04622
RIG-I-like receptor signaling pathway
char04920
Adipocytokine signaling pathway
char05132
Salmonella infection
char05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
char00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
105902465
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
105902465
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
105902465
09143 Cell growth and death
04210 Apoptosis
105902465
04217 Necroptosis
105902465
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
105902465
04622 RIG-I-like receptor signaling pathway
105902465
09152 Endocrine system
04920 Adipocytokine signaling pathway
105902465
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
105902465
09171 Infectious disease: bacterial
05132 Salmonella infection
105902465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
char03019
]
105902465
04121 Ubiquitin system [BR:
char04121
]
105902465
Enzymes [BR:
char01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105902465
Messenger RNA biogenesis [BR:
char03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
105902465
Ubiquitin system [BR:
char04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
105902465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
ATG16
zf-C3HC4_2
zf-C3HC4_4
zf-RING_6
Sina_ZnF
MATH
Motif
Other DBs
NCBI-GeneID:
105902465
NCBI-ProteinID:
XP_012685507
Ensembl:
ENSCHAG00000003456
UniProt:
A0A6P3W082
LinkDB
All DBs
Position
12:21269278..21277845
Genome browser
AA seq
616 aa
AA seq
DB search
MAISLELIYPVSVEGAMATQEPSPPSSMESNKPGFPKKILANKLEDKHLCNCCHNILRRP
FQAQCGHRFCSYCFNRTVSNGPQKCNACIKEDIFEEPTSILKQGCAFPDNAARREVETLA
AICVHEGCTWKGSIKEYELSHEGKCEFMIIPCPSCKERLRFNEQERHNERECPERTLNCK
YCKEPFHFKNIKAHDEICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRYHVVGCD
MLVEKEKIHEHERACAHEHLNLLLHFIMGMKLSLEGMQPQSLELAGYKAHELHQSLRELE
ARVSQLNAMSAPIVGPSVQGASSSSSSSSAGASGSAAAAAPPLPTPTLNTLNTLNTSFTP
LPSSVGAALELQLHSEKTKVAELGRRCQELEVKSGTFQDVVCVLNREVERFATTIEASNR
QHRLDQDKIEALSNKVRQLERTVGVKDLTVAELEGRLREMAATTFDGVFIWRISDFTKKR
QDAIAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGQSDALLKWP
FNQKVTLMLLDQSNREHIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLEGKNTYI
RDDTIFIKAIVDLTGL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcaatatcactagaattaatttacccagtgtctgtagagggagccatggcaacgcaa
gaaccttctcccccttcatcaatggagagcaacaaaccaggtttccccaagaagatcttg
gccaataagctggaggataagcacctttgcaactgctgtcataacattttgaggagacca
ttccaagctcagtgtggtcatcggttttgttcctactgctttaacagaactgtcagcaat
ggaccccagaaatgcaatgcctgtatcaaggaggacatatttgaagagccgacatctatt
ctcaaacaaggctgtgcatttcctgacaatgcagctcgaagagaggtggagacgcttgct
gctatttgcgttcatgaaggttgcacatggaagggcagcatcaaagaatatgagctaagc
cacgagggaaagtgcgagttcatgatcatcccctgtccctcgtgcaaggagcgcctccgc
ttcaacgaacaggaaaggcacaatgagcgcgaatgtccggagagaaccctcaactgcaag
tactgcaaagagccatttcatttcaaaaacattaaggcacatgatgagatctgccccaag
tatccgatgatctgtgaaggctgcgcaaagaagaaaatcccccgggaaaagtatgtcgac
cacataaagttttgcagcaaattcagaactccatgcagatatcacgtggtgggctgtgac
atgttggttgagaaggagaagatccacgagcacgagcgtgcctgtgcccacgagcatctg
aacctgctgctgcacttcatcatgggcatgaagctgagtctggagggcatgcagccccag
agcctggagctcgccgggtacaaggcccacgagctgcaccagtccctgcgcgagctggag
gcccgcgtcagccagctgaacgccatgtccgctcccatcgtcgggccttccgtgcagggg
gcctcgtcctcatcctcctcgtcctccgcaggcgcctccggttccgcggcggcggcggct
ccccctcttcccaccccgacgctgaacacgttgaacacgctgaacacgtcctttaccccc
ctgcccagctctgtgggcgcggcgctggagctccagctgcacagcgagaaaaccaaggtg
gccgagctgggcaggcgctgccaggagctggaggtgaagtcgggcaccttccaggacgtg
gtgtgcgtgctgaaccgtgaggtggagcgcttcgccaccaccatcgaggccagcaaccgg
cagcaccgactggaccaggacaagatcgaagctctgagcaacaaggtccggcagctggag
agaacggtgggggtgaaggacctgacggtggctgagctggaggggaggctgcgcgagatg
gctgccaccactttcgacggcgtcttcatctggaggatctcagacttcaccaaaaagcgt
caggacgccattgctgggcgagctcctgccatgttttcccccgcgttttacaccagcaag
tacggctataagatgtgtttacggatctacctgaatggggacgggacaggacggggctct
catctctcgctgttctttgtcgtgatgaggggacagagtgatgccctgctcaaatggcca
ttcaaccaaaaggtaacccttatgctcctggaccagagcaaccgggagcacatcatcgat
gccttccgtcccgatgtcacttcctcctccttccaaaggcccgtgagtgagatgaacatc
gccagcggctgtccgctcttctgcccactctccaagcttgagggcaagaacacgtacata
cgtgacgacaccatcttcatcaaggccatcgttgatctcacaggcctctag
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