KEGG   Clupea harengus (Atlantic herring): 105902465
Entry
105902465         CDS       T09045                                 
Name
(RefSeq) TNF receptor-associated factor 2 isoform X2
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
char  Clupea harengus (Atlantic herring)
Pathway
char04010  MAPK signaling pathway
char04137  Mitophagy - animal
char04141  Protein processing in endoplasmic reticulum
char04210  Apoptosis
char04217  Necroptosis
char04621  NOD-like receptor signaling pathway
char04622  RIG-I-like receptor signaling pathway
char04920  Adipocytokine signaling pathway
char05132  Salmonella infection
char05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:char00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    105902465
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    105902465
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    105902465
  09143 Cell growth and death
   04210 Apoptosis
    105902465
   04217 Necroptosis
    105902465
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    105902465
   04622 RIG-I-like receptor signaling pathway
    105902465
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    105902465
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    105902465
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    105902465
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:char03019]
    105902465
   04121 Ubiquitin system [BR:char04121]
    105902465
Enzymes [BR:char01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105902465
Messenger RNA biogenesis [BR:char03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     105902465
Ubiquitin system [BR:char04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    105902465
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 ATG16 zf-C3HC4_2 zf-C3HC4_4 zf-RING_6 Sina_ZnF MATH
Other DBs
NCBI-GeneID: 105902465
NCBI-ProteinID: XP_012685507
Ensembl: ENSCHAG00000003456
UniProt: A0A6P3W082
LinkDB
Position
12:21269278..21277845
AA seq 616 aa
MAISLELIYPVSVEGAMATQEPSPPSSMESNKPGFPKKILANKLEDKHLCNCCHNILRRP
FQAQCGHRFCSYCFNRTVSNGPQKCNACIKEDIFEEPTSILKQGCAFPDNAARREVETLA
AICVHEGCTWKGSIKEYELSHEGKCEFMIIPCPSCKERLRFNEQERHNERECPERTLNCK
YCKEPFHFKNIKAHDEICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRYHVVGCD
MLVEKEKIHEHERACAHEHLNLLLHFIMGMKLSLEGMQPQSLELAGYKAHELHQSLRELE
ARVSQLNAMSAPIVGPSVQGASSSSSSSSAGASGSAAAAAPPLPTPTLNTLNTLNTSFTP
LPSSVGAALELQLHSEKTKVAELGRRCQELEVKSGTFQDVVCVLNREVERFATTIEASNR
QHRLDQDKIEALSNKVRQLERTVGVKDLTVAELEGRLREMAATTFDGVFIWRISDFTKKR
QDAIAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGQSDALLKWP
FNQKVTLMLLDQSNREHIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLEGKNTYI
RDDTIFIKAIVDLTGL
NT seq 1851 nt   +upstreamnt  +downstreamnt
atggcaatatcactagaattaatttacccagtgtctgtagagggagccatggcaacgcaa
gaaccttctcccccttcatcaatggagagcaacaaaccaggtttccccaagaagatcttg
gccaataagctggaggataagcacctttgcaactgctgtcataacattttgaggagacca
ttccaagctcagtgtggtcatcggttttgttcctactgctttaacagaactgtcagcaat
ggaccccagaaatgcaatgcctgtatcaaggaggacatatttgaagagccgacatctatt
ctcaaacaaggctgtgcatttcctgacaatgcagctcgaagagaggtggagacgcttgct
gctatttgcgttcatgaaggttgcacatggaagggcagcatcaaagaatatgagctaagc
cacgagggaaagtgcgagttcatgatcatcccctgtccctcgtgcaaggagcgcctccgc
ttcaacgaacaggaaaggcacaatgagcgcgaatgtccggagagaaccctcaactgcaag
tactgcaaagagccatttcatttcaaaaacattaaggcacatgatgagatctgccccaag
tatccgatgatctgtgaaggctgcgcaaagaagaaaatcccccgggaaaagtatgtcgac
cacataaagttttgcagcaaattcagaactccatgcagatatcacgtggtgggctgtgac
atgttggttgagaaggagaagatccacgagcacgagcgtgcctgtgcccacgagcatctg
aacctgctgctgcacttcatcatgggcatgaagctgagtctggagggcatgcagccccag
agcctggagctcgccgggtacaaggcccacgagctgcaccagtccctgcgcgagctggag
gcccgcgtcagccagctgaacgccatgtccgctcccatcgtcgggccttccgtgcagggg
gcctcgtcctcatcctcctcgtcctccgcaggcgcctccggttccgcggcggcggcggct
ccccctcttcccaccccgacgctgaacacgttgaacacgctgaacacgtcctttaccccc
ctgcccagctctgtgggcgcggcgctggagctccagctgcacagcgagaaaaccaaggtg
gccgagctgggcaggcgctgccaggagctggaggtgaagtcgggcaccttccaggacgtg
gtgtgcgtgctgaaccgtgaggtggagcgcttcgccaccaccatcgaggccagcaaccgg
cagcaccgactggaccaggacaagatcgaagctctgagcaacaaggtccggcagctggag
agaacggtgggggtgaaggacctgacggtggctgagctggaggggaggctgcgcgagatg
gctgccaccactttcgacggcgtcttcatctggaggatctcagacttcaccaaaaagcgt
caggacgccattgctgggcgagctcctgccatgttttcccccgcgttttacaccagcaag
tacggctataagatgtgtttacggatctacctgaatggggacgggacaggacggggctct
catctctcgctgttctttgtcgtgatgaggggacagagtgatgccctgctcaaatggcca
ttcaaccaaaaggtaacccttatgctcctggaccagagcaaccgggagcacatcatcgat
gccttccgtcccgatgtcacttcctcctccttccaaaggcccgtgagtgagatgaacatc
gccagcggctgtccgctcttctgcccactctccaagcttgagggcaagaacacgtacata
cgtgacgacaccatcttcatcaaggccatcgttgatctcacaggcctctag

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